Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 300 2e-76 seq23 96.9 4e-15 seq103 87.8 2e-12 >seq4 Length=676188 Score = 300 bits (332), Expect = 2e-76 Identities = 1130/1742 (65%), Gaps = 49/1742 (3%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| || |||||||| || ||||||| || | ||||| |||| || |||| Sbjct 641695 TAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTG 641636 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715 ||| || ||| | |||| || || | | || |||||| ||||| |||| Sbjct 641635 CCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCA 641576 Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGCGGTAGA 105773 || | || ||||| | | ||| | || | || ||||||| || || ||||| Sbjct 641575 CGGTCAGCAGCCATCTGCACGACGTG--TCGTTGAGAAATTTCCCAAACAGTTTTGTAGA 641518 Query 105774 GATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCA 105833 || ||||| || | ||||| | | |||||| ||||| ||||| | | | | | Sbjct 641517 GAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTC---GGCAA 641461 Query 105834 TGAGA---TCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGAT 105890 ||| | | ||||||| | | |||||||| || || | |||||| || | || Sbjct 641460 TGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCC 641401 Query 105891 GCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGT 105950 |||||||| | || || || || ||| | | | || ||||| | ||||| Sbjct 641400 AGGGGTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGT 641341 Query 105951 AGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 106010 | || || ||||| ||||| ||||| | || || | ||| || || || ||||| || | Sbjct 641340 AAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGG 641281 Query 106011 CCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT 106070 | | || || ||| |||| || | |||||||| | ||||| ||| || ||| | Sbjct 641280 CGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACT 641221 Query 106071 CGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGT 106128 | || | || || ||||| | ||||||| ||||| ||||| | || | ||| | Sbjct 641220 CCCAGAGGTCAGAA-GGCTTCACGT-CCCACATGTCAAACTGAAGAATGCCCTCGGAGGC 641163 Query 106129 GGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCT 106187 |||||| |||||||| || || | ||||| | | |||||||| |||| || Sbjct 641162 GGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG-GCAG 641104 Query 106188 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 106247 |||| || || || ||||| ||||| || | || | ||| ||| ||| | Sbjct 641103 TGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGG 641044 Query 106248 AATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 106307 | ||||||| ||| | || || | || |||||||| || || || | ||||| Sbjct 641043 ACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAA 640984 Query 106308 TAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 106367 | || | ||||||||| || || || || || ||||| || || |||| Sbjct 640983 TCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAA 640924 Query 106368 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 106427 ||| || ||| || || ||| | || |||| || || || || | | || Sbjct 640923 TGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGT 640864 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG----GCGATTGATGCCAAATTGCAA 106483 | ||| ||| | | | | ||| || ||| || | || ||||| |||||| Sbjct 640863 A---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAA 640808 Query 106484 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTA 106543 ||||| |||||| | | |||||| | |||||| || || | |||||| || Sbjct 640807 ACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGG 640748 Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 || || ||||| ||||| ||||| ||||| ||||||| |||||||||||||||||| | Sbjct 640747 ATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAA 640688 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTAC 106662 || | |||||||| ||||| | || || || | | ||| | | || | ||| | Sbjct 640687 GGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG-GGCACG--- 640632 Query 106663 AATGG-CGTTGGCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 106719 ||||| || | || | ||||| ||| |||||| ||||| || ||||||||||| Sbjct 640631 AATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTC 640572 Query 106720 ACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCAC 106778 || ||| | || || || || || || || || | |||| ||| | ||| Sbjct 640571 GCCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGT 640513 Query 106779 CCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA- 106837 || ||| || |||||||||||||| || |||||||| || | || | ||| | | Sbjct 640512 TCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAG 640453 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 106897 ||| || | ||||| | || || || ||| || ||||||||||| | | ||| ||| Sbjct 640452 CACGGA-CTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCG 640394 Query 106898 TGCCATGGCT-CAAG---ATAG--ACTGCGATAGATCCCTTTCGACGCCCAGCTTGATTT 106951 ||||| |||| |||| || | | ||| || || ||| | | ||| | || | Sbjct 640393 TGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTT--GTTG-CCACCCTGGTCG 640337 Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 ||||| | || ||| ||| || || |||||||| ||||| | ||||| || || Sbjct 640336 ACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCG 640277 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || || ||| || | |||| | | |||| | || || ||||| Sbjct 640276 TTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCA 640217 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 |||||| ||| ||||| || || | | || || ||||||| || | ||| | Sbjct 640216 CCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTG 640157 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 |||||||| || ||| ||||||||| |||| ||| | ||||| ||||| ||| Sbjct 640156 TCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTG 640097 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCA 107249 || || || |||| ||||| |||| | | || |||||| | ||| || |||| Sbjct 640096 AATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATGGTAGGTTTCCA 640039 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 ||| ||||| | || || ||| |||| || |||||||||| ||||| |||| Sbjct 640038 GGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGG 639979 Query 107310 GT 107311 || Sbjct 639978 GT 639977 >seq23 Length=320936 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 |||||| || ||||||||||| | || || ||| ||| | ||| | |||| || Sbjct 129185 GGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGCAAATAG 129244 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9489 ||| || |||| | | || |||||||||||||| || ||||| | | || || Sbjct 129245 ATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATTCGGAACCGCTTAC 129304 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | ||| || ||| ||||||||| || ||||| || | ||| || || || | Sbjct 129305 GCTAAA-GAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTTTTGCCAG 129363 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 9606 ||||||| |||||||||| || || || ||||||||||| || |||| |||| | Sbjct 129364 TACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTCTCAAACT 129423 Query 9607 ATCTCTCAGGTTGCTTGAGAAA 9628 ||||||| || |||||||| Sbjct 129424 ---TCTCAGGCTGTTTGAGAAA 129442 >seq103 Length=87482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| ||||||||||| || || || | ||| || |||||| || || Sbjct 35280 GGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACC 35221 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391 ||||| | || |||||||||| ||| | |||| ||| || | ||| |||||| | Sbjct 35220 GGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCA-AAAGCACCGCTGAAGAAAA 35162 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCA 117450 |||| ||||| ||||| |||| | ||||| ||||||| | || |||||| | | Sbjct 35161 TACCTTCCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTG-GATTCTTTGTCCTGA 35103 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTT 117479 | ||| || ||||| | |||||||| Sbjct 35102 ATCCAACGGATAGCCCAATCTGCCTTCTT 35074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589960644780920