Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq36 172 1e-37
seq6 147 5e-30
>seq36
Length=230664
Score = 172 bits (190), Expect = 1e-37
Identities = 166/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| || | ||| | || ||||| || ||||| ||||| || ||||| || | |||||
Sbjct 21058 CAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATC 21117
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
|| ||||| || || ||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 21118 CTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTC 21177
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
|||||| ||| ||| ||||| || || ||||| ||| |||||| |||||||| | ||
Sbjct 21178 TTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGT 21237
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||||||| | || || ||||| | |||||
Sbjct 21238 CTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Score = 159 bits (176), Expect = 8e-34
Identities = 154/198 (78%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||| ||||| |||||||| || || || || |||||||| || || | || |||||
Sbjct 21289 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCTTC 21348
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| ||| || || ||||| || || || || ||||| |||||||||||||| ||||||||
Sbjct 21349 CAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 21408
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| ||| ||||| || || || || || ||| |||||| || ||||||| |||||
Sbjct 21409 AATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTCTT 21468
Query 195111 TCCTGTCAAAGTTTTTAC 195128
||| |||||||| || ||
Sbjct 21469 TCCGGTCAAAGTCTTGAC 21486
>seq6
Length=626929
Score = 147 bits (162), Expect = 5e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||| ||| || || || ||||| ||||| || || | ||||| ||||||||
Sbjct 11371 GTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTG 11430
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| ||||| || |||||||| || ||||| || ||||| || |||||
Sbjct 11431 CTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTT 11490
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| || |||||||| ||| ||||| || ||||| | |||||| |||||
Sbjct 11491 GGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCTGT 11550
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | |||||
Sbjct 11551 GAGGGTCTTGACGAAAATCTGCAT 11574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109442749768211
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |