Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq90 107 2e-17 seq36 87.8 1e-11 >seq90 Length=99827 Score = 107 bits (118), Expect = 2e-17 Identities = 320/490 (65%), Gaps = 13/490 (3%) Strand=Plus/Plus Query 552109 AAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGT 552168 |||| || || ||||| || || || || ||||| | |||||| ||| | | Sbjct 50213 AAGTCCACGACATTGTTCTAGTGGGAGGCTCTACTCGGATTCCTCGTGTTCAGAATCTCA 50272 Query 552169 TAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTG 552228 | || || |||||||| |||| | |||| | || || || |||||||| | Sbjct 50273 TTAGCGACTACTTCAATGGCAAAACGCCCAGCAAAAGCATCAACCCTGACGAGGCTGTAG 50332 Query 552229 CCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTG-ATGAAAAACTACAA 552287 || |||| || || | || || ||||| | |||||| | ||| || || | |||| Sbjct 50333 CCAATGGCGCTGCTGTACAGGCTGCTATCTTGTCTGGAGATACTACATCCAAGTCAACAA 50392 Query 552288 A--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTA 552345 | | || | ||| | || ||| | ||||| || || || | ||||| | ||| |||| Sbjct 50393 ACGAAATCTTGCTTCTTGACGTTGCACCTCTCTCACTAGGCATTGAAACTGCTGGTGGTA 50452 Query 552346 TTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTT 552405 | ||||| || | || | |||| || || ||||| || || || |||| Sbjct 50453 TGATGACAAAGTTGATTCCTCGAAACACAACCATTCCCACAAAGAAGACTGAGACGTTTT 50512 Query 552406 CTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAAT 552465 | |||| ||||||||| || ||| || |||||| | | || || || | | Sbjct 50513 CGACGTTTTCAGATAACCAGCCTGGCGTCCTCATTCAAGTGTACGAGGGTGAGCGCCAGC 50572 Query 552466 TCACTAAAGATAATAATCAACTTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGC 552520 |||||| || || ||||||| | | || || ||| || |||||||| || Sbjct 50573 GCACTAAGGACAA----CAACTTGATGGGCAAATTCGAACTTACT-GGCATTCCTCCCGC 50627 Query 552521 TCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAA 552580 || || ||||| || || ||||||||||| || ||| | ||||||||||| || |||| Sbjct 50628 GCCCCGCGGAGTTCCTCAGATTGAAGTTACATTTGATCTTGATGCCAATGGTATCATGAA 50687 Query 552581 TGTGACTGCT 552590 ||| | ||| Sbjct 50688 CGTGTCCGCT 50697 >seq36 Length=230664 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| |||||||| || || ||| || || ||||| || || || || | Sbjct 21570 GAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCG 21629 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || ||||| || ||||| |||||||| || | || || |||||||||||||| || Sbjct 21630 GCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTC 21689 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 || || ||||| || || || || || || |||| ||| | | || |||| Sbjct 21690 CTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAG-ATGACTCGACCTCAAGAG 21748 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || ||||| ||||| |||||||| ||||| Sbjct 21749 TGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029151466634170