Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq90 107 2e-17
seq36 87.8 1e-11
>seq90
Length=99827
Score = 107 bits (118), Expect = 2e-17
Identities = 320/490 (65%), Gaps = 13/490 (3%)
Strand=Plus/Plus
Query 552109 AAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGT 552168
|||| || || ||||| || || || || ||||| | |||||| ||| | |
Sbjct 50213 AAGTCCACGACATTGTTCTAGTGGGAGGCTCTACTCGGATTCCTCGTGTTCAGAATCTCA 50272
Query 552169 TAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTG 552228
| || || |||||||| |||| | |||| | || || || |||||||| |
Sbjct 50273 TTAGCGACTACTTCAATGGCAAAACGCCCAGCAAAAGCATCAACCCTGACGAGGCTGTAG 50332
Query 552229 CCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTG-ATGAAAAACTACAA 552287
|| |||| || || | || || ||||| | |||||| | ||| || || | ||||
Sbjct 50333 CCAATGGCGCTGCTGTACAGGCTGCTATCTTGTCTGGAGATACTACATCCAAGTCAACAA 50392
Query 552288 A--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTA 552345
| | || | ||| | || ||| | ||||| || || || | ||||| | ||| ||||
Sbjct 50393 ACGAAATCTTGCTTCTTGACGTTGCACCTCTCTCACTAGGCATTGAAACTGCTGGTGGTA 50452
Query 552346 TTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTT 552405
| ||||| || | || | |||| || || ||||| || || || ||||
Sbjct 50453 TGATGACAAAGTTGATTCCTCGAAACACAACCATTCCCACAAAGAAGACTGAGACGTTTT 50512
Query 552406 CTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAAT 552465
| |||| ||||||||| || ||| || |||||| | | || || || | |
Sbjct 50513 CGACGTTTTCAGATAACCAGCCTGGCGTCCTCATTCAAGTGTACGAGGGTGAGCGCCAGC 50572
Query 552466 TCACTAAAGATAATAATCAACTTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGC 552520
|||||| || || ||||||| | | || || ||| || |||||||| ||
Sbjct 50573 GCACTAAGGACAA----CAACTTGATGGGCAAATTCGAACTTACT-GGCATTCCTCCCGC 50627
Query 552521 TCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAA 552580
|| || ||||| || || ||||||||||| || ||| | ||||||||||| || ||||
Sbjct 50628 GCCCCGCGGAGTTCCTCAGATTGAAGTTACATTTGATCTTGATGCCAATGGTATCATGAA 50687
Query 552581 TGTGACTGCT 552590
||| | |||
Sbjct 50688 CGTGTCCGCT 50697
>seq36
Length=230664
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
||| ||||| |||||||| || || ||| || || ||||| || || || || |
Sbjct 21570 GAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCG 21629
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
|| ||||| || ||||| |||||||| || | || || |||||||||||||| ||
Sbjct 21630 GCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTC 21689
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434
|| || ||||| || || || || || || |||| ||| | | || ||||
Sbjct 21690 CTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAG-ATGACTCGACCTCAAGAG 21748
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | || || || ||||| ||||| |||||||| |||||
Sbjct 21749 TGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029151466634170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |