Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 316 4e-81 seq103 136 7e-27 >seq4 Length=676188 Score = 316 bits (350), Expect = 4e-81 Identities = 1207/1872 (64%), Gaps = 66/1872 (4%) Strand=Plus/Minus Query 212552 CACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTT 212611 ||| || ||||| | || | |||||||| | ||||| | ||||||||||| ||||| Sbjct 641738 CACGGTGAACTGGATAGGTGCGGCAGCAGCTTGCGTGCGCAAGTAGTACATGCCCGTCTT 641679 Query 212612 TAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTG 212671 |||||| ||||||| | |||||| | |||| |||| | || | | Sbjct 641678 GAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGA---TCTTGCCCATAGTG----G 641626 Query 212672 GTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCT 212731 | ||||| || || | ||| || ||||| |||||| ||||| | | | Sbjct 641625 G--ATCCTT------CATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACG 641574 Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 |||||| ||||| | | || | || || || | ||||| || || ||| ||| | Sbjct 641573 GTCAGCAGCCATCTGCACGACGTGTCGTTGAGAAATTTCCCAAACAGTTTTGTAGAGAGC 641514 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAG 212848 ||||| ||| | |||| | |||||| ||||| | || || | | ||| | | Sbjct 641513 TTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACG 641454 Query 212849 CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908 | | ||| | || ||| |||||| || | || || | ||| || Sbjct 641453 GTTCTT---CATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGG 641397 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| | |||||| ||||||| || || | | ||||||| ||| || ||||| || Sbjct 641396 GTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGG 641337 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||| || ||| ||||| || |||||||| | || || || |||||||| || | Sbjct 641336 CTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAG 641277 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088 ||| || ||| | | ||| ||||| ||| | | || || | | | ||| Sbjct 641276 CAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTG-CTCCT----TCAGACTATTCCAC 641222 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 || ||||| |||| |||||||| ||||||||||||||| | ||||| | | Sbjct 641221 TC--CCAGA--GGTCAGAAGGCTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGA 641166 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 |||| ||||| | | ||||| || || ||||||||||||| ||| || || Sbjct 641165 GGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAGGC 641106 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 |||||||| | ||||||||| |||||||||| | ||||||||| |||||| || Sbjct 641105 AGTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGG 641046 Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCC 213328 |||| || ||||| || | |||| | || || || |||||||| || | || Sbjct 641045 GGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACC 640986 Query 213329 GATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTC 213388 || || | ||||| || ||| || | ||||| | |||||| |||| || Sbjct 640985 AATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATC 640926 Query 213389 GATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATT 213448 ||||| |||| |||||||| | || | |||||| | | || | | | Sbjct 640925 AATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTC------TG 640872 Query 213449 GAACACGTAGC--CCC----CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502 ||| |||||| ||| || | || || ||||||| || | ||||| ||| Sbjct 640871 GAAGTCGTAGCGTCCCTCGTTGTAGTCTACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTT 640812 Query 213503 GCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCA 213562 |||||| || ||||| | || | | | |||||| | || || ||||| |||||| || Sbjct 640811 GCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCT 640752 Query 213563 TCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCAT 213622 ||||| || |||| ||||| ||||| ||| |||| | ||||||||||||||| Sbjct 640751 GCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCAT 640692 Query 213623 GTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTT 213682 | | || || |||||| ||||| | |||| || | |||||| | |||| | Sbjct 640691 GAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCT-TCTGGGCAC 640633 Query 213683 GACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTC 213742 || ||| ||| | | | | ||| |||| ||| ||||| | | || || Sbjct 640632 GAATGGTCGCACGAC--CCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTC 640575 Query 213743 GTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCC 213801 | ||| || | | | |||| || || || ||| ||||| || |||| || | Sbjct 640574 CTCGCCGTAGCAGTCAG-CCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCAC 640516 Query 213802 CG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCC 213860 || || |||| ||| | || |||||| || || || | ||| || || ||| | || Sbjct 640515 CGTTCTTCTC-GACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCA 640457 Query 213861 CTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCC 213920 | | | || ||| || || || |||| ||| || || ||||| | || Sbjct 640456 CGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCG 640397 Query 213921 GCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCC 213977 |||||||| ||||||| ||| |||||||| ||||| | || | ||||| |||||||| Sbjct 640396 GCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCG 640337 Query 213978 ACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCG 214037 || |||||| ||||||| | || || | ||| | | || |||||| ||| Sbjct 640336 ACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCG 640277 Query 214038 TTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGAGCCCTATGC 214095 ||||| || || || || ||||| | ||| | | | || ||| | || || || | Sbjct 640276 TTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCA-AG-CCGATAC 640219 Query 214096 CACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGC 214155 |||| || ||||||||||||||||||| | | | || || |||||| | |||| Sbjct 640218 CACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGC 640159 Query 214156 TGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGA--CGAGCCAGA 214213 |||| || | | || | | |||||| ||| |||| | | | || | ||||| Sbjct 640158 TGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCT--GACATTGAGGTGTGCCAGC 640101 Query 214214 GTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273 |||||| || ||||| ||| || | | | ||| | || | ||| |||||| || Sbjct 640100 GTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTC 640041 Query 214274 CAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTG 214333 ||||||| || | || |||| | |||| | ||| | ||||||||| Sbjct 640040 CAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTG 639981 Query 214334 GGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTT 214390 ||| | || | || || ||| | |||||| || || || ||||||| |||||| Sbjct 639980 GGGTCGCTCGACAATCTTGCCGTTGAG---CTTGAGAAGATATGACCGCTCCAAAGTCTT 639924 Query 214391 GAACCCAAAGTA 214402 ||| |||||||| Sbjct 639923 GAAGCCAAAGTA 639912 >seq103 Length=87482 Score = 136 bits (150), Expect = 7e-27 Identities = 301/443 (68%), Gaps = 19/443 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||||| ||||| |||||||||||||| || |||| ||||||||||| Sbjct 35571 CTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTCTC 35512 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTG-TTCCAGCA 47957 ||||||| || || || | || || |||| || | ||| ||| | | |||| Sbjct 35511 CATGAAGTCAAAAGGATTAGCCGTCTTGTACA-CCTTCTCATTACCAAGAGCAACAAGCA 35453 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG-G 48016 || |||| || || |||| ||||| | | ||| | ||| |||||||| | || | Sbjct 35452 GGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGAG 35393 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| |||||||||| || |||||||| ||||| || || || || | |||| Sbjct 35392 CACA-TGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT---GGCATAG---AGCATG 48130 || | ||| || | || | || | ||||||| | | || |||| | Sbjct 35333 TGTT-------GGA-TCATCTGCTTGCTGGCTC-GGTGCTTCAAGTGAGAGTGCAGCAAG 35283 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| |||||| || || || || ||| | ||||||||||| |||| Sbjct 35282 CAGGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGA 35223 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || || |||||||| || | || |||| || |||||| Sbjct 35222 CCGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAA 35163 Query 48251 ATGCCCTCCACTGCCGCGAACGC 48273 || || ||||| || || || || Sbjct 35162 ATACCTTCCACGGCAGCAAAAGC 35140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931500976510720