Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 284 2e-71 seq103 114 2e-20 >seq4 Length=676188 Score = 284 bits (314), Expect = 2e-71 Identities = 841/1280 (66%), Gaps = 45/1280 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475 || |||||||| ||||||||||||||||| ||| ||||||||| ||| || |||| || Sbjct 641104 GTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAG-CTCACGGGCCTCAGG 641046 Query 221476 AGAAGTGAAGGGCATACGCA--GCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || || ||||| |||| ||| ||||| ||||||| || ||||| || || | | Sbjct 641045 GGACTCAAATGGCATGCGCAAGGCAAG-GAAAG-CGTCGGCGAGACCCTGGACGCCAACA 640988 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || || |||| ||||| | ||||| | ||| | || |||| ||||| || ||||| Sbjct 640987 CCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGC-CTCCTGG-ACGGGGTAGTGGTTGA 640930 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | || || | |||| ||||| || | ||| | |||||| ||||||||| Sbjct 640929 CATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGA 640870 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | || || |||| | | || || || || || || | Sbjct 640869 AGTCGTA---------GCGTCCCTCGTTGTAG---TCTACGAAGGCAGGCAGAGCCAGAG 640822 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||||| ||| || || || ||||| || | | |||| | || || || || | Sbjct 640821 AGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAA 640762 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||| || ||| || |||| || || || || ||| | ||| || |||| Sbjct 640761 GGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCT 640702 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||||||||| || ||| || ||||| ||| ||| |||| || || |||||| | Sbjct 640701 TGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCT 640642 Query 221892 CTCTGG-CGCTCACCGTC------CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944 ||||| | | | ||| | |||| | ||| ||| ||||||||| Sbjct 640641 -TCTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAG------ 640589 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 ||||| | |||||| || ||||| || ||||||| || || | ||| ||| Sbjct 640588 -AGAGCCT--CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCAC 640532 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 |||||| |||| | ||| | | ||| | || |||||| || || || ||||| || Sbjct 640531 ATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGA 640472 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || | ||| | | || || ||| ||||| || || | || ||| | Sbjct 640471 GCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGG 640412 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 |||||||| | || |||||||| ||||||| || | ||| | |||||| ||||||||| Sbjct 640411 AACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTG 640352 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 ||||||||||| || || || || |||||| | ||||| | || | | Sbjct 640351 TTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACA 640292 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 || ||||| ||||||||||| |||||| | || ||| | | | | || Sbjct 640291 CCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACA 640232 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 || |||||||||||| || || ||||||||||||||| ||||||| ||||| | Sbjct 640231 TTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAG 640172 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT-T 222423 |||||||| || ||||||||| | || | || || |||||||||| |||| ||| Sbjct 640171 ATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGA 640112 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 |||| || ||||| || || ||||| ||||||||| ||| || ||||| || Sbjct 640111 GGTGTGCCA-GCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAG 640053 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCAT 222543 || ||| || || | ||||| | || ||||| || ||| | ||| | ||| Sbjct 640052 ATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCAT 639993 Query 222544 GTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601 ||||| |||||| | ||| ||| || | ||||| |||| || || || Sbjct 639992 AATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGA--AGATATGACCGC 639935 Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661 |||| ||||||||| |||||||| | || || |||||| | | || | ||||| | Sbjct 639934 TCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGCGGAG 639875 Query 222662 TCCAGCTCCGACTTGTGCTT 222681 || |||||| | ||||||| Sbjct 639874 TCGAGCTCCTCCCTGTGCTT 639855 >seq103 Length=87482 Score = 114 bits (126), Expect = 2e-20 Identities = 294/448 (66%), Gaps = 9/448 (2%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || |||||||| ||||| || || || ||||||||| | ||||| | | Sbjct 35129 AGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTA 35188 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||| ||| || || |||||||| || ||| |||||||| | ||| Sbjct 35189 TCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCT 35248 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | || |||||||| |||| ||| ||||||||| |||| || | |||||| | Sbjct 35249 CGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCACTTGAAGC 35305 Query 26057 ACAAACCTTCTCAAG-AGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 || | | |||| ||| | | |||| || || | ||| ||||| |||||||| Sbjct 35306 ACCGAGC-CAGCAAGCAGATGATCCAACAG-ATTATTACAGATGCTGTCACCATCGAGAA 35363 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174 ||||||| | |||||||| || | | |||| Sbjct 35364 AGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAA 35423 Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCT 26233 || |||||||||| ||| ||||| | |||| ||| | ||| | | | | | | Sbjct 35424 ACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAAT-GAGAAGGTGT 35482 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| ||| |||| || || ||||| ||||| ||||| || |||| || ||||| |||| Sbjct 35483 ACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACT 35542 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||| || || | || || || || || Sbjct 35543 TCTTCGAGAAACGAGTGGGTGAGTACCA 35570 Score = 93.3 bits (102), Expect = 8e-14 Identities = 181/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 25471 AAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATT 25530 ||| | || ||| | |||||||| ||||| | || |||||| ||||||||||| Sbjct 34663 AAATAGATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATC 34722 Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTC 25590 |||||| | || || || ||| |||| || || || ||||| || | | | || Sbjct 34723 GATCTGTCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTC 34782 Query 25591 AAGT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 | | || | ||||||||||||| |||||||| || || || |||||||| || Sbjct 34783 ATCTCCCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTT 34842 Query 25648 GAGAGATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 ||| | |||| | | ||||| | ||| | | ||||| || || ||||| |||||||| Sbjct 34843 GAGCGCTTCAGCGGCGAAGTCCAAGTCCCT-GAGGCTCGTTGCTTTTACGGATTCCAGAT 34901 Query 25707 GGCCATCGAAAATGTGCACTCTGA 25730 || || ||| | ||||| || Sbjct 34902 CATGATGGAGAATATCCACTCGGA 34925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928813068339520