Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq4 284 2e-71
seq103 114 2e-20
>seq4
Length=676188
Score = 284 bits (314), Expect = 2e-71
Identities = 841/1280 (66%), Gaps = 45/1280 (4%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475
|| |||||||| ||||||||||||||||| ||| ||||||||| ||| || |||| ||
Sbjct 641104 GTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAG-CTCACGGGCCTCAGG 641046
Query 221476 AGAAGTGAAGGGCATACGCA--GCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533
|| || ||||| |||| ||| ||||| ||||||| || ||||| || || | |
Sbjct 641045 GGACTCAAATGGCATGCGCAAGGCAAG-GAAAG-CGTCGGCGAGACCCTGGACGCCAACA 640988
Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591
|| || |||| ||||| | ||||| | ||| | || |||| ||||| || |||||
Sbjct 640987 CCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGC-CTCCTGG-ACGGGGTAGTGGTTGA 640930
Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651
| || || | |||| ||||| || | ||| | |||||| |||||||||
Sbjct 640929 CATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGA 640870
Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711
| | | || || |||| | | || || || || || || |
Sbjct 640869 AGTCGTA---------GCGTCCCTCGTTGTAG---TCTACGAAGGCAGGCAGAGCCAGAG 640822
Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771
||||| ||| || || || ||||| || | | |||| | || || || || |
Sbjct 640821 AGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAA 640762
Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831
||||| || ||| || |||| || || || || ||| | ||| || ||||
Sbjct 640761 GGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCT 640702
Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891
|||||||||| || ||| || ||||| ||| ||| |||| || || |||||| |
Sbjct 640701 TGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCT 640642
Query 221892 CTCTGG-CGCTCACCGTC------CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944
||||| | | | ||| | |||| | ||| ||| |||||||||
Sbjct 640641 -TCTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAG------ 640589
Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004
||||| | |||||| || ||||| || ||||||| || || | ||| |||
Sbjct 640588 -AGAGCCT--CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCAC 640532
Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064
|||||| |||| | ||| | | ||| | || |||||| || || || ||||| ||
Sbjct 640531 ATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGA 640472
Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124
|| | || | ||| | | || || ||| ||||| || || | || ||| |
Sbjct 640471 GCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGG 640412
Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184
|||||||| | || |||||||| ||||||| || | ||| | |||||| |||||||||
Sbjct 640411 AACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTG 640352
Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGT 222244
||||||||||| || || || || |||||| | ||||| | || | |
Sbjct 640351 TTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACA 640292
Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304
|| ||||| ||||||||||| |||||| | || ||| | | | | ||
Sbjct 640291 CCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACA 640232
Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364
|| |||||||||||| || || ||||||||||||||| ||||||| ||||| |
Sbjct 640231 TTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAG 640172
Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT-T 222423
|||||||| || ||||||||| | || | || || |||||||||| |||| |||
Sbjct 640171 ATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGA 640112
Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483
|||| || ||||| || || ||||| ||||||||| ||| || ||||| ||
Sbjct 640111 GGTGTGCCA-GCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAG 640053
Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCAT 222543
|| ||| || || | ||||| | || ||||| || ||| | ||| | |||
Sbjct 640052 ATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCAT 639993
Query 222544 GTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601
||||| |||||| | ||| ||| || | ||||| |||| || || ||
Sbjct 639992 AATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGA--AGATATGACCGC 639935
Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661
|||| ||||||||| |||||||| | || || |||||| | | || | ||||| |
Sbjct 639934 TCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGCGGAG 639875
Query 222662 TCCAGCTCCGACTTGTGCTT 222681
|| |||||| | |||||||
Sbjct 639874 TCGAGCTCCTCCCTGTGCTT 639855
>seq103
Length=87482
Score = 114 bits (126), Expect = 2e-20
Identities = 294/448 (66%), Gaps = 9/448 (2%)
Strand=Plus/Plus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| |||| || |||||||| ||||| || || || ||||||||| | ||||| | |
Sbjct 35129 AGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTA 35188
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||||| ||| || || |||||||| || ||| |||||||| | |||
Sbjct 35189 TCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCT 35248
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056
| || |||||||| |||| ||| ||||||||| |||| || | |||||| |
Sbjct 35249 CGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCACTTGAAGC 35305
Query 26057 ACAAACCTTCTCAAG-AGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114
|| | | |||| ||| | | |||| || || | ||| ||||| ||||||||
Sbjct 35306 ACCGAGC-CAGCAAGCAGATGATCCAACAG-ATTATTACAGATGCTGTCACCATCGAGAA 35363
Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174
||||||| | |||||||| || | | ||||
Sbjct 35364 AGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAA 35423
Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCT 26233
|| |||||||||| ||| ||||| | |||| ||| | ||| | | | | | |
Sbjct 35424 ACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAAT-GAGAAGGTGT 35482
Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293
||| ||| |||| || || ||||| ||||| ||||| || |||| || ||||| ||||
Sbjct 35483 ACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACT 35542
Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||| || || | || || || || ||
Sbjct 35543 TCTTCGAGAAACGAGTGGGTGAGTACCA 35570
Score = 93.3 bits (102), Expect = 8e-14
Identities = 181/264 (69%), Gaps = 5/264 (2%)
Strand=Plus/Plus
Query 25471 AAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATT 25530
||| | || ||| | |||||||| ||||| | || |||||| |||||||||||
Sbjct 34663 AAATAGATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATC 34722
Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTC 25590
|||||| | || || || ||| |||| || || || ||||| || | | | ||
Sbjct 34723 GATCTGTCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTC 34782
Query 25591 AAGT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647
| | || | ||||||||||||| |||||||| || || || |||||||| ||
Sbjct 34783 ATCTCCCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTT 34842
Query 25648 GAGAGATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
||| | |||| | | ||||| | ||| | | ||||| || || ||||| ||||||||
Sbjct 34843 GAGCGCTTCAGCGGCGAAGTCCAAGTCCCT-GAGGCTCGTTGCTTTTACGGATTCCAGAT 34901
Query 25707 GGCCATCGAAAATGTGCACTCTGA 25730
|| || ||| | ||||| ||
Sbjct 34902 CATGATGGAGAATATCCACTCGGA 34925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928813068339520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |