Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq36 127 1e-23 seq90 98.7 6e-15 >seq36 Length=230664 Score = 127 bits (140), Expect = 1e-23 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| |||||||||||||| || || | |||||||| || || || Sbjct 21277 ACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGT 21336 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| | || || ||||| ||||| ||||| || || ||||||||||| || Sbjct 21337 ACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCC 21396 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||||||||||| ||||||| || |||||||||| | || || Sbjct 21397 TTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAG 21456 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760 |||||| || || ||||| | |||||| || Sbjct 21457 GGTAATGGTCTTTCCGGTCAAAGTCTTGAC 21486 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| |||||||| || || ||| || | || || || || || || Sbjct 21567 ACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGT 21626 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 21627 GCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCC 21686 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| |||||| || || || |||| || | | |||| Sbjct 21687 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGA-CCTCAA 21745 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| || || || |||||||| || Sbjct 21746 GAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTG 21785 >seq90 Length=99827 Score = 98.7 bits (108), Expect = 6e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| ||| | |||||||||||||| ||||| || || || |||||||| || || || Sbjct 49585 GATGCTGTAGTCACTGTTCCAGCATACTTTAACGACTCGCAGCGTCAAGCGACCAAGGAC 49644 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || || | ||||| || | || | || ||||| |||||||| || || || || || Sbjct 49645 GCTGGTACCATTGCCGGAATCAACATCTTGCGTATCATTAATGAGCCCACTGCTGCAGCT 49704 Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGA 474882 |||| || || ||||| ||||| |||| Sbjct 49705 ATTGCGTACGGCCTTGACAAGAAGGCTGA 49733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268061968369484