Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq36 127 1e-23
seq90 98.7 6e-15
>seq36
Length=230664
Score = 127 bits (140), Expect = 1e-23
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| |||||||||||||| || || | |||||||| || || ||
Sbjct 21277 ACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGT 21336
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||||| | || || ||||| ||||| ||||| || || ||||||||||| ||
Sbjct 21337 ACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCC 21396
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||||||||||||| ||||||| || |||||||||| | || ||
Sbjct 21397 TTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAG 21456
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760
|||||| || || ||||| | |||||| ||
Sbjct 21457 GGTAATGGTCTTTCCGGTCAAAGTCTTGAC 21486
Score = 120 bits (132), Expect = 2e-21
Identities = 160/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| |||||||| || || ||| || | || || || || || ||
Sbjct 21567 ACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGT 21626
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | || ||||| ||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 21627 GCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCC 21686
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| |||||||| |||||| || || || |||| || | | ||||
Sbjct 21687 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGA-CCTCAA 21745
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || ||||| || || || |||||||| ||
Sbjct 21746 GAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTG 21785
>seq90
Length=99827
Score = 98.7 bits (108), Expect = 6e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793
||||| ||| | |||||||||||||| ||||| || || || |||||||| || || ||
Sbjct 49585 GATGCTGTAGTCACTGTTCCAGCATACTTTAACGACTCGCAGCGTCAAGCGACCAAGGAC 49644
Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853
|| || | ||||| || | || | || ||||| |||||||| || || || || ||
Sbjct 49645 GCTGGTACCATTGCCGGAATCAACATCTTGCGTATCATTAATGAGCCCACTGCTGCAGCT 49704
Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGA 474882
|||| || || ||||| ||||| ||||
Sbjct 49705 ATTGCGTACGGCCTTGACAAGAAGGCTGA 49733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268061968369484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |