Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 315 8e-81 seq103 87.8 2e-12 seq23 86.0 7e-12 >seq4 Length=676188 Score = 315 bits (348), Expect = 8e-81 Identities = 1128/1738 (65%), Gaps = 43/1738 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| ||||| |||| ||| || || | ||||| ||| Sbjct 639978 CCCCAGCACATGATTATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTC 640037 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 75329 |||| || ||| | |||||| || | | |||| ||||| |||| || || | Sbjct 640038 CTGGAAACCTACCATCTCATGTCC--AGCAAACTCTTCACACACGCCTCACCCACACTAT 640095 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| ||||| ||||| | ||| |||| ||||||||| ||| || ||||||| Sbjct 640096 TCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAGG 640155 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || ||| | || ||||||| || || | | || || ||||| ||| ||||| Sbjct 640156 ACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 640215 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | ||||| || || | |||| | | |||| | || ||| || || | Sbjct 640216 GTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCCTACATTGCCGGCACCA 640275 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || ||||| | ||||| |||||||| || || ||| ||| || | |||| Sbjct 640276 ACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGATATG 640335 Query 75570 TAAATCAAGCGGGGCGTC--GCAAG--GGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | || | | ||| | || | || | | || | |||||||| || ||||| Sbjct 640336 TCGACCAGG-GTGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGCAC 640394 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG- 75684 |||||| | | ||||||||||| || ||| || || || | ||||| | || ||| Sbjct 640395 GCCGATGTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAG-TCCGTGC 640453 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | | ||| | || | || |||||||| || |||||||||||||| || ||| || Sbjct 640454 TCGTGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAGAA 640513 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 ||| | ||| |||| | || || || || || || || || | ||| || | Sbjct 640514 CGGTGATTGGACTCTGATGTGCCCCAACGAATGCCCC-GGCCTGGCTGACTGCTACGGCG 640572 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 |||||||||| || ||||| ||||||||| ||||| | | |||||| | | Sbjct 640573 AGGAGTTTGAGGCTCTCTATGAAAAGTATGAGCGTGAGGGCAAGGGTCGTGCGACCATTC 640632 Query 75864 CAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 ||| | || | | ||| | | || || | | ||||| ||||| || | || | Sbjct 640633 GTGCC-CAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATCCTTTC 640691 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 ||||| ||||||||||| || |||| |||||| ||||| ||||| |||||||||||| Sbjct 640692 ATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAATCCGC 640751 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 ||||| || ||||||||||||||| | |||||| | | |||||| ||||||||| Sbjct 640752 AGCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTGTTTGC 640811 Query 76043 AATTTGGCATCAATCGC----CCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 || ||||| || | || ||| || ||| | | | | ||| ||| | || Sbjct 640812 AACTTGGCCTCTCTGGCTCTGCCTGCCTTCGTA-GACTACAACGAGGGACGC---TACGA 640867 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 | | || || || || |||| || | ||| || || ||| || ||||||| Sbjct 640868 CTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCATTGA 640927 Query 76159 CAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGG 76218 || || ||||| || || || || || ||||||||| | || ||||| Sbjct 640928 TGTCAACCACTACCCCGTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGATTGG 640987 Query 76219 TTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGA 76278 | | || || || |||||||| || | || || | ||| ||||||| || Sbjct 640988 TGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCTTGCCTTGCGCATGCCATTTGAGTCCCC 641047 Query 76279 TGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGC 76338 ||| ||| ||| | || | || ||||| ||||| || || || |||| || Sbjct 641048 TGAGGCCCGTGAGCTCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCACTGC 641107 Query 76339 GAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398 | |||||||| | | ||||| | || || |||||||| |||||||| || Sbjct 641108 CTCTGTCGAATTGGCCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCGCCTC 641167 Query 76399 CCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTACGACTGG 76456 | | || | ||||||||||| ||||||| | ||||| || || | || || ||| Sbjct 641168 CGAGGGCATTCTTCAGTTTGACATGTGGG-ACGTGAAGCC-TTCTGACCTCTGGGAGTGG 641225 Query 76457 GATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 76516 || ||| ||||| | ||||||||| | || |||| ||| || || | || || Sbjct 641226 AATAGTCTGAAGGAGCAGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGCCCCC 641285 Query 76517 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACA 76576 ||||| || || || ||| | || || | ||||| ||||| ||||| || || ||||| Sbjct 641286 ATGCCTACGGCTTCTACCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTACACG 641345 Query 76577 ACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTC 76636 | ||||| |||| | | ||| |||||||| || |||||||| || Sbjct 641346 TCCAACATTTACCAACGCCGTGTCCTGGCAGGTGAATTCCAGGTTGTCAACCCCTGGCTG 641405 Query 76637 GTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCA-TGGT 76692 | || || ||| | || || || ||||| | | ||||||| | | ||| || Sbjct 641406 CTGAAAGATCTCGTCGACATGGGCCTTTGGTCTGATGCTATGAAGAACCGTATCATTGCC 641465 Query 76693 GAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTA 76752 || | | ||||||||||| |||||| | | ||||| | || ||||| |||||| Sbjct 641466 GAGAAC----GGTTCCATTCAGAATATCCCCAACATCCCGGCCGACATCAAAGCTCTCTA 641521 Query 76753 CCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGT 76810 | || || ||||||| || | | | | ||| | | ||||| || || |||||| Sbjct 641522 CAAAACTGTTTGGGAAATTTCTCAACG--ACACGTCGTGCAGATGGCTGCTGACCGTGGT 641579 Query 76811 CGCTTCATTGATCAAAGTCAAAG--TATGAATCTATTCATGGAAAGTCCAACGATGTCCA 76868 ||||| || | |||| || | | || | |||| | ||| || ||| || Sbjct 641580 GCTTTCATCGACC--AGTCCCAGTCTCTTAACATTCACATGAAGGATCCCACTATGGGCA 641637 Query 76869 AGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 || || |||| ||||| | || ||||||| ||| ||||| || || |||||||| Sbjct 641638 AGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAGACGGGCATGTACTA 641695 >seq103 Length=87482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || ||| || | |||||| || | ||||||| |||| Sbjct 35074 AAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAATC-CAGCTTCGCCCAGCG 35132 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTT 65140 | | |||| ||||| ||||| ||||| |||||| ||| | || ||| |||| | Sbjct 35133 CTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTT-TGCTTCTATCT 35191 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| |||||||||| || | ||||| || || |||||| || ||| | || || | Sbjct 35192 TCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGC 35251 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | ||||||||||| ||| || |||||| Sbjct 35252 GTGATGAGGGTCTGCACACAGACTTTGCC 35280 >seq23 Length=320936 Score = 86.0 bits (94), Expect = 7e-12 Identities = 294/449 (65%), Gaps = 22/449 (5%) Strand=Plus/Minus Query 175243 TTTCTCAAGCAACCCGAGAGATATTTTG-GAAGT--GGTGCCAAGATCCCCCGAGGCGCC 175299 |||||||| || || |||| | |||| |||| || |||||||| || || || || Sbjct 129442 TTTCTCAAACAGCCTGAGA---AGTTTGAGAAGCTAGGAGCCAAGATTCCTCGCGGAGCT 129386 Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 | |||||||| |||||||| || || || || | || ||||| || |||||| Sbjct 129385 ATCCTCGCGGGACCTCCAGGTACTGGCAAAACGCTTATTGCTAAAGCCACGGCAGGTGAA 129326 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAAACTTTGTGGAGATGTTTGTTGGTG 175417 || ||| |||||| | || | | || | | | ||||| || ||||||||||||| Sbjct 129325 TCTGGTGTTCCATTCTTT-AGCG-TAAGCGGTTCCGAATTTGTAGAAATGTTTGTTGGTG 129268 Query 175418 TGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTG 175477 | ||| | | |||| || ||||| |||| | ||| | ||| ||| || || Sbjct 129267 TTGGTCCTTCACGGGTCCGAGATCTATTTGCCGAAGGTCGCAAGAATGCACCCTGCATCA 129208 Query 175478 TCTTCATTGATGAGATTGATGCGGTGGGCA-AG-----CAACGCAGCGCTGGTGGTATGC 175531 | ||||||||||| || ||||| | || | || ||| |||| | || | Sbjct 129207 TTTTCATTGATGAAATCGATGCCATTGGTAGAGCTCGTCAAGAAAGCGGACGAGGCTTCG 129148 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 | || || ||| ||||| || | ||||| | || || || |||||||| || Sbjct 129147 GTGGCAACGATGAGCGAGAAGCTACGCTGAATCAGATTCTGACAGAAATGGATGGATTCA 129088 Query 175592 ACA---ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATG 175648 ||| |||| | |||| || | || | ||| || || | ||||| |||||| Sbjct 129087 ACACCCGTGAGCAAG---TTGTCGTGCTGGCCGGCACCAACCGAGCCGATATTCTTGATA 129031 Query 175649 ACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 | || ||| | || || || ||||||||| Sbjct 129030 AGGCTCTCATGCGTCCCGGGCGTTTTGAT 129002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596549219691040