Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq103 118 3e-21
seq68 114 4e-20
seq32 89.7 2e-12
seq23 84.2 6e-11
>seq103
Length=87482
Score = 118 bits (130), Expect = 3e-21
Identities = 325/493 (66%), Gaps = 4/493 (1%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| ||| ||||| | || |||||||| ||||| |||||||| | |
Sbjct 35060 TTCCTTGCATTCGCAAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAATCCA 35119
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
| || || || | ||||||||||||| || || || ||||| ||||| ||||| |
Sbjct 35120 GCTTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGC-T 35178
Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615
| ||| ||||| || ||||| || |||||||| | | || || || || || |||
Sbjct 35179 TTTGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAAC 35238
Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAA 133675
||| | || || | || |||| || ||||| || |||||| || || |||||| |
Sbjct 35239 GAATTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCAC 35298
Query 133676 TTAGAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATT 133735
|| ||| | | || ||| | | ||| || | ||||||| ||| || || ||
Sbjct 35299 TTGAAGCACCGAGCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATC 35358
Query 133736 GAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTG 133795
||| || ||| | | | ||| |||| || | || |||| ||||||| ||
Sbjct 35359 GAGAAAGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTG 35418
Query 133796 ATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAAG 133855
||| | | || ||||| |||||||| || | || ||| | ||| || |||
Sbjct 35419 ATGAAACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAG 35478
Query 133856 ATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAAT-CAAAGAC 133914
| ||| | || ||||| || |||| ||||||| || | ||||| | |||||
Sbjct 35479 GTGTACAAGACGGCTAATCCTTTTGACTTCATGGAGAACA-TCTCATTGGGTGGCAAGAC 35537
Query 133915 TAATTTCTTCGAG 133927
|| |||||||||
Sbjct 35538 AAACTTCTTCGAG 35550
>seq68
Length=142692
Score = 114 bits (126), Expect = 4e-20
Identities = 332/507 (65%), Gaps = 8/507 (2%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | |||||| |||||||| |||||||| ||||| || ||||| || || |
Sbjct 29287 GCACCGTGGGCAATCATGCAATCACGTTCCATTTCTCCGAATCGGAGACCGCCGTCTCTG 29346
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604
|| | ||| || |||| || || || | | || |||||| || ||| |||
Sbjct 29347 GCACGACCTTCCACAGGTTGTCGTGTCATGATCTGCACAGGACCACGGGCACGGGCATGA 29406
Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTC 251664
||| |||| ||||| || |||||| |||||| | | || |||| ||||| |
Sbjct 29407 ATCTTGTCATCCACCATGTGACGGAGACGTTGGTAGTACGTCGGGCCGAAGAAGACCTGC 29466
Query 251665 GAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTCATAA 251724
| || || || || || | | || ||||| | ||| || | || | |||
Sbjct 29467 GCCCTCAATTTCTTACCCGTGTGGCCATTGTACATGATTTCAAAGCCTCTTGACTGATAG 29526
Query 251725 CCAAGTTTCTGTA---GCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGTG 251781
||| | || | | ||||||| | || | || | | | | ||| |||
Sbjct 29527 CCATGCTTGCGCAACAGCTCTGACACCGAGTCGACGGTCACG---TCGGTGAAAGGCGTG 29583
Query 251782 CCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTTGG 251841
| || || | | |||| || | ||||||| | | | ||| | | |||
Sbjct 29584 GCATCACCCTCCATACCCTCAAGAGTAGACACTTTACTCAGCAAACACTCAATTAAATGG 29643
Query 251842 GCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCA 251901
|| || ||||| || |||||||| || ||||||||||||||||| ||| | | ||
Sbjct 29644 GCAATTGTCATTCGCGACGGAATAGCGTGTGGATTGATGATGATGTCAGGTGTGACACCT 29703
Query 251902 TCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTGTCC 251960
|| |||||| ||||| |||| || || ||| || ||||| || |||||||||||
Sbjct 29704 TCTCGAGTGAACGGCATGTCCTCTT-GTCGGTAAGTGACACCAATGGTACCCTTTTGTCC 29762
Query 251961 GTGACGAGAACTGAACTTATCACCAAT 251987
|||||||||| || |||||||||||
Sbjct 29763 GTGACGAGAAGCAAATTTATCACCAAT 29789
>seq32
Length=259671
Score = 89.7 bits (98), Expect = 2e-12
Identities = 175/254 (69%), Gaps = 6/254 (2%)
Strand=Plus/Minus
Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652
|| ||||| ||||| |||||| | || || || || ||||| || ||||| | |||
Sbjct 102384 CGTCGCTGGATATATCCAGTTTCGGCAGTCTTGACTGCAGTATCGATGAGACCTTCTCGA 102325
Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTC 302711
||| |||| ||||||||||| | ||| || ||| || || | | | ||| | ||
Sbjct 102324 CCAGCCATGGCATGGAAGAAAAACTCGGATGG-CGTGAGACCACGGAGGTACGAGTTTTC 102266
Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771
||| || ||||| || ||||| |||| ||| ||| || || || || ||||| | ||
Sbjct 102265 AACAAAGCCACGAGCTTCGGGGGAATAATCGTCCTTTGTGAAATGCGGTAGGGTTCGGTA 102206
Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA--AATC 302829
| | || | || ||||| || || || || ||||||| || | || || | ||
Sbjct 102205 TTTGAAACCAAAGGGAATACGTTTCCCTTCGACAATCTGCTGACC--GACAAGAGCAGTC 102148
Query 302830 ATCTGCGAAATATT 302843
||||| ||||| ||
Sbjct 102147 ATCTGAGAAATGTT 102134
>seq23
Length=320936
Score = 84.2 bits (92), Expect = 6e-11
Identities = 142/203 (70%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATT-TTGTCTCGCAATT 289086
|||||| ||||| ||||| ||||||||||| | || || | ||| ||| || ||
Sbjct 129178 TACCAATGGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTG---CGACCTT 129234
Query 289087 --GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144
||||||| |||| || || || | |||| ||||||| |||||||||||||||| |
Sbjct 129235 CGGCAAATAGATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATTCGG 129294
Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
|| || ||| || ||||| ||| | ||| ||||| || | || | ||| |
Sbjct 129295 AACCGCTTACGCTAAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCG 129354
Query 289205 TCTTACCTGTTCCAGGTGGTCCC 289227
| || || || || || ||||||
Sbjct 129355 TTTTGCCAGTACCTGGAGGTCCC 129377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471766062007021
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |