Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq103 118 3e-21 seq68 114 4e-20 seq32 89.7 2e-12 seq23 84.2 6e-11 >seq103 Length=87482 Score = 118 bits (130), Expect = 3e-21 Identities = 325/493 (66%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| ||| ||||| | || |||||||| ||||| |||||||| | | Sbjct 35060 TTCCTTGCATTCGCAAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAATCCA 35119 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 | || || || | ||||||||||||| || || || ||||| ||||| ||||| | Sbjct 35120 GCTTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGC-T 35178 Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | ||| ||||| || ||||| || |||||||| | | || || || || || ||| Sbjct 35179 TTTGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAAC 35238 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAA 133675 ||| | || || | || |||| || ||||| || |||||| || || |||||| | Sbjct 35239 GAATTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCAC 35298 Query 133676 TTAGAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATT 133735 || ||| | | || ||| | | ||| || | ||||||| ||| || || || Sbjct 35299 TTGAAGCACCGAGCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATC 35358 Query 133736 GAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTG 133795 ||| || ||| | | | ||| |||| || | || |||| ||||||| || Sbjct 35359 GAGAAAGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTG 35418 Query 133796 ATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAAG 133855 ||| | | || ||||| |||||||| || | || ||| | ||| || ||| Sbjct 35419 ATGAAACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAG 35478 Query 133856 ATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAAT-CAAAGAC 133914 | ||| | || ||||| || |||| ||||||| || | ||||| | ||||| Sbjct 35479 GTGTACAAGACGGCTAATCCTTTTGACTTCATGGAGAACA-TCTCATTGGGTGGCAAGAC 35537 Query 133915 TAATTTCTTCGAG 133927 || ||||||||| Sbjct 35538 AAACTTCTTCGAG 35550 >seq68 Length=142692 Score = 114 bits (126), Expect = 4e-20 Identities = 332/507 (65%), Gaps = 8/507 (2%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||| |||||||| |||||||| ||||| || ||||| || || | Sbjct 29287 GCACCGTGGGCAATCATGCAATCACGTTCCATTTCTCCGAATCGGAGACCGCCGTCTCTG 29346 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | ||| || |||| || || || | | || |||||| || ||| ||| Sbjct 29347 GCACGACCTTCCACAGGTTGTCGTGTCATGATCTGCACAGGACCACGGGCACGGGCATGA 29406 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTC 251664 ||| |||| ||||| || |||||| |||||| | | || |||| ||||| | Sbjct 29407 ATCTTGTCATCCACCATGTGACGGAGACGTTGGTAGTACGTCGGGCCGAAGAAGACCTGC 29466 Query 251665 GAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTCATAA 251724 | || || || || || | | || ||||| | ||| || | || | ||| Sbjct 29467 GCCCTCAATTTCTTACCCGTGTGGCCATTGTACATGATTTCAAAGCCTCTTGACTGATAG 29526 Query 251725 CCAAGTTTCTGTA---GCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGTG 251781 ||| | || | | ||||||| | || | || | | | | ||| ||| Sbjct 29527 CCATGCTTGCGCAACAGCTCTGACACCGAGTCGACGGTCACG---TCGGTGAAAGGCGTG 29583 Query 251782 CCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTTGG 251841 | || || | | |||| || | ||||||| | | | ||| | | ||| Sbjct 29584 GCATCACCCTCCATACCCTCAAGAGTAGACACTTTACTCAGCAAACACTCAATTAAATGG 29643 Query 251842 GCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCA 251901 || || ||||| || |||||||| || ||||||||||||||||| ||| | | || Sbjct 29644 GCAATTGTCATTCGCGACGGAATAGCGTGTGGATTGATGATGATGTCAGGTGTGACACCT 29703 Query 251902 TCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTGTCC 251960 || |||||| ||||| |||| || || ||| || ||||| || ||||||||||| Sbjct 29704 TCTCGAGTGAACGGCATGTCCTCTT-GTCGGTAAGTGACACCAATGGTACCCTTTTGTCC 29762 Query 251961 GTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||| || ||||||||||| Sbjct 29763 GTGACGAGAAGCAAATTTATCACCAAT 29789 >seq32 Length=259671 Score = 89.7 bits (98), Expect = 2e-12 Identities = 175/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| ||||| |||||| | || || || || ||||| || ||||| | ||| Sbjct 102384 CGTCGCTGGATATATCCAGTTTCGGCAGTCTTGACTGCAGTATCGATGAGACCTTCTCGA 102325 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTC 302711 ||| |||| ||||||||||| | ||| || ||| || || | | | ||| | || Sbjct 102324 CCAGCCATGGCATGGAAGAAAAACTCGGATGG-CGTGAGACCACGGAGGTACGAGTTTTC 102266 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||| || ||||| || ||||| |||| ||| ||| || || || || ||||| | || Sbjct 102265 AACAAAGCCACGAGCTTCGGGGGAATAATCGTCCTTTGTGAAATGCGGTAGGGTTCGGTA 102206 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA--AATC 302829 | | || | || ||||| || || || || ||||||| || | || || | || Sbjct 102205 TTTGAAACCAAAGGGAATACGTTTCCCTTCGACAATCTGCTGACC--GACAAGAGCAGTC 102148 Query 302830 ATCTGCGAAATATT 302843 ||||| ||||| || Sbjct 102147 ATCTGAGAAATGTT 102134 >seq23 Length=320936 Score = 84.2 bits (92), Expect = 6e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATT-TTGTCTCGCAATT 289086 |||||| ||||| ||||| ||||||||||| | || || | ||| ||| || || Sbjct 129178 TACCAATGGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTG---CGACCTT 129234 Query 289087 --GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||| |||| || || || | |||| ||||||| |||||||||||||||| | Sbjct 129235 CGGCAAATAGATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATTCGG 129294 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || ||| || ||||| ||| | ||| ||||| || | || | ||| | Sbjct 129295 AACCGCTTACGCTAAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCG 129354 Query 289205 TCTTACCTGTTCCAGGTGGTCCC 289227 | || || || || || |||||| Sbjct 129355 TTTTGCCAGTACCTGGAGGTCCC 129377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471766062007021