Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq4 170 2e-36
seq39 116 5e-20
seq103 93.3 5e-13
>seq4
Length=676188
Score = 170 bits (188), Expect = 2e-36
Identities = 340/502 (68%), Gaps = 15/502 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| || | ||||||| ||| || || || |||||||| | || || |||||
Sbjct 640343 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 640284
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| ||||||||||| || | ||||| ||| | |||||| | ||| | |||||
Sbjct 640283 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 640224
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| ||||||||| | ||||| ||||||||||| |||||||||||
Sbjct 640223 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 640164
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| ||||| ||||| ||||| || || | |||||
Sbjct 640163 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 640104
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||| || ||||| | || ||||| | | | |||||| | ||||||
Sbjct 640103 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGT 640044
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| || || ||| | | || ||| || ||| || |||| |||||
Sbjct 640043 TTCCAGGACTCGCTCAA---TATTGTC----TC------CCC--AGATCCCGACAGCGAC 639999
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||| | ||||| |||||| |||||||| | |||| | |||| || || ||
Sbjct 639998 ACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGA 639939
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
||| || ||| ||| ||||||||| | || ||||| | ||| | | |||||
Sbjct 639938 CCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGC 639879
Query 1630545 GGCGTCGAGGGCATCGCGGTGC 1630566
|| |||||| | || | ||||
Sbjct 639878 GGAGTCGAGCTCCTCCCTGTGC 639857
Score = 105 bits (116), Expect = 8e-17
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927
|||||||||| ||||| ||||| || || ||||||||||| |||| ||| || ||||
Sbjct 641013 CGTCGGCGAGACCCTGGACGCCAACACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGG 640954
Query 1627928 CCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCT 1627987
|||| | || ||||||||||||| || || | | ||| ||||||| || |||||||
Sbjct 640953 CCTCCTGGACGGGGTAGTGGTTGACATCAATGATTCTGTTCAGGTTGCGAACAACGACCT 640894
Query 1627988 GGACGATCTCGTGCAG 1628003
|| || |||||| ||
Sbjct 640893 GGGTGACCTCGTGGAG 640878
>seq39
Length=215409
Score = 116 bits (128), Expect = 5e-20
Identities = 90/107 (84%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||| ||||| |||||||||||||| || ||| |||| |||||| |||| ||||||
Sbjct 80464 GCCTCCAATTACCTTGACATCAAGCCTCTTCTTGATGTTGGTTGCAAGACTGTTGCCAAC 80405
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||||||| || || || || || ||||| || |||||
Sbjct 80404 ATGATCAAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTCAACAT 80358
>seq103
Length=87482
Score = 93.3 bits (102), Expect = 5e-13
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| |||||| ||||| || |||||| ||||| |||||||| | | |||||
Sbjct 35576 GCCTTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATG 35517
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || || || | ||||||||| ||| || || || | |
Sbjct 35516 TTCTCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACA 35457
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||||||| ||||| |||||||| |||||||| ||| | ||| |||||||| |
Sbjct 35456 AGCAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGT 35397
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGAT 868911
|| || |||| | ||| ||| |||||||||||||||
Sbjct 35396 AGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGAT 35356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106914917221361
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |