Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 170 2e-36 seq39 116 5e-20 seq103 93.3 5e-13 >seq4 Length=676188 Score = 170 bits (188), Expect = 2e-36 Identities = 340/502 (68%), Gaps = 15/502 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || | ||||||| ||| || || || |||||||| | || || ||||| Sbjct 640343 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 640284 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||||| ||| | |||||| | ||| | ||||| Sbjct 640283 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 640224 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | ||||| ||||||||||| ||||||||||| Sbjct 640223 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 640164 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| ||||| ||||| ||||| || || | ||||| Sbjct 640163 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 640104 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| || ||||| | || ||||| | | | |||||| | |||||| Sbjct 640103 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGT 640044 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | || || ||| | | || ||| || ||| || |||| ||||| Sbjct 640043 TTCCAGGACTCGCTCAA---TATTGTC----TC------CCC--AGATCCCGACAGCGAC 639999 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||| | ||||| |||||| |||||||| | |||| | |||| || || || Sbjct 639998 ACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGA 639939 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 ||| || ||| ||| ||||||||| | || ||||| | ||| | | ||||| Sbjct 639938 CCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGC 639879 Query 1630545 GGCGTCGAGGGCATCGCGGTGC 1630566 || |||||| | || | |||| Sbjct 639878 GGAGTCGAGCTCCTCCCTGTGC 639857 Score = 105 bits (116), Expect = 8e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927 |||||||||| ||||| ||||| || || ||||||||||| |||| ||| || |||| Sbjct 641013 CGTCGGCGAGACCCTGGACGCCAACACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGG 640954 Query 1627928 CCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCT 1627987 |||| | || ||||||||||||| || || | | ||| ||||||| || ||||||| Sbjct 640953 CCTCCTGGACGGGGTAGTGGTTGACATCAATGATTCTGTTCAGGTTGCGAACAACGACCT 640894 Query 1627988 GGACGATCTCGTGCAG 1628003 || || |||||| || Sbjct 640893 GGGTGACCTCGTGGAG 640878 >seq39 Length=215409 Score = 116 bits (128), Expect = 5e-20 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||| ||||| |||||||||||||| || ||| |||| |||||| |||| |||||| Sbjct 80464 GCCTCCAATTACCTTGACATCAAGCCTCTTCTTGATGTTGGTTGCAAGACTGTTGCCAAC 80405 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||| || || || || || ||||| || ||||| Sbjct 80404 ATGATCAAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTCAACAT 80358 >seq103 Length=87482 Score = 93.3 bits (102), Expect = 5e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| || |||||| ||||| |||||||| | | ||||| Sbjct 35576 GCCTTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATG 35517 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || || || | ||||||||| ||| || || || | | Sbjct 35516 TTCTCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACA 35457 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||| ||||| |||||||| |||||||| ||| | ||| |||||||| | Sbjct 35456 AGCAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGT 35397 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGAT 868911 || || |||| | ||| ||| ||||||||||||||| Sbjct 35396 AGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGAT 35356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106914917221361