Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 138 2e-26 seq39 98.7 2e-14 seq103 96.9 5e-14 >seq4 Length=676188 Score = 138 bits (152), Expect = 2e-26 Identities = 335/504 (66%), Gaps = 19/504 (4%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| | ||||||| ||| || || || |||||||| | | || ||||| Sbjct 640343 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 640284 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||||||||| || | ||||| ||| | |||||| | ||| | ||||| Sbjct 640283 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 640224 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | ||||| | || ||||| || ||||||||||| Sbjct 640223 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 640164 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| ||||| || | | ||||| Sbjct 640163 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 640104 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTG--GGACATGGCCTCGTAG 2073837 || ||||| || ||||| | || ||| | || | ||| ||||||| | |||| Sbjct 640103 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTG-AAGAGT-TTGCTGGACATGAGATGGTAG 640046 Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897 || | || || ||| | | | || ||| || || |||| ||| Sbjct 640045 GTTTCCAGGACTCGCTCAA-----TATT----GTC------TCCCCAGATCCCGACAGCG 640001 Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957 || ||||| ||||||| ||||||||||||||| | | || | |||| || || Sbjct 640000 ACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATAT 639941 Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017 ||||| || ||| | |||||||||| ||| | || | || | | ||| Sbjct 639940 GACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATG 639881 Query 2074018 GCGGCGTCGAGGGCCTCCTTGTGC 2074041 |||| |||||| ||||| ||||| Sbjct 639880 GCGGAGTCGAGCTCCTCCCTGTGC 639857 Score = 96.9 bits (106), Expect = 5e-14 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 || ||||||||||| |||||||| || ||| |||||| ||| || | | | ||| Sbjct 641098 GCAGCATGGTAGATGGTCTCAAATATC-TGCTTGTTGAGCTCACGGGCCTCAGGGGACTC 641040 Query 2070111 CCACGGCAGGTCCAT--CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATC 2070168 | |||| | || || || || |||||||| || ||||| ||||| || || ||| Sbjct 641039 AAATGGCATGCGCAAGGCAAGGAAA--GCGTCGGCGAGACCCTGGACGCCAACACCAATC 640982 Query 2070169 GGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATC 2070228 |||||||| |||| ||| || ||||||||| | || ||||||||||||| || || Sbjct 640981 GGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAATG 640922 Query 2070229 ACGCGGTTGAGGTTG 2070243 | | ||| |||||| Sbjct 640921 ATTCTGTTCAGGTTG 640907 >seq39 Length=215409 Score = 98.7 bits (108), Expect = 2e-14 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||| ||||| ||||||||||| || || ||| | || |||||||| || |||||| Sbjct 80464 GCCTCCAATTACCTTGACATCAAGCCTCTTCTTGATGTTGGTTGCAAGACTGTTGCCAAC 80405 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 | |||||||||||||| || || || || || ||||| || ||||| Sbjct 80404 ATGATCAAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTCAACAT 80358 >seq103 Length=87482 Score = 96.9 bits (106), Expect = 5e-14 Identities = 173/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| ||||| ||||| || |||||| ||||| |||||||| | | Sbjct 35584 TGACACCAGCCTTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCA 35525 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||| |||||| | || || || |||||| ||| |||||| || | Sbjct 35524 ATGAGATGTTCTCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAA 35465 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | |||||||||| ||||| || || ||||||||||| ||| | | ||| |||| Sbjct 35464 GAGCAACAAGCAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCA 35405 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || |||| | ||| | | ||||||||||||||| ||| || | Sbjct 35404 TGCCAAGTAGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCAT 35345 Query 794131 CGATGATGATCTG 794143 | | || ||||| Sbjct 35344 CTGTAATAATCTG 35332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915955678324787