Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq4 138 2e-26
seq39 98.7 2e-14
seq103 96.9 5e-14
>seq4
Length=676188
Score = 138 bits (152), Expect = 2e-26
Identities = 335/504 (66%), Gaps = 19/504 (4%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||||||||| | ||||||| ||| || || || |||||||| | | || |||||
Sbjct 640343 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 640284
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
| ||||||||||| || | ||||| ||| | |||||| | ||| | |||||
Sbjct 640283 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 640224
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| ||||||||| | ||||| | || ||||| || |||||||||||
Sbjct 640223 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 640164
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| ||||| || | | |||||
Sbjct 640163 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 640104
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTG--GGACATGGCCTCGTAG 2073837
|| ||||| || ||||| | || ||| | || | ||| ||||||| | ||||
Sbjct 640103 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTG-AAGAGT-TTGCTGGACATGAGATGGTAG 640046
Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897
|| | || || ||| | | | || ||| || || |||| |||
Sbjct 640045 GTTTCCAGGACTCGCTCAA-----TATT----GTC------TCCCCAGATCCCGACAGCG 640001
Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957
|| ||||| ||||||| ||||||||||||||| | | || | |||| || ||
Sbjct 640000 ACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATAT 639941
Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017
||||| || ||| | |||||||||| ||| | || | || | | |||
Sbjct 639940 GACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATG 639881
Query 2074018 GCGGCGTCGAGGGCCTCCTTGTGC 2074041
|||| |||||| ||||| |||||
Sbjct 639880 GCGGAGTCGAGCTCCTCCCTGTGC 639857
Score = 96.9 bits (106), Expect = 5e-14
Identities = 141/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCTC 2070110
|| ||||||||||| |||||||| || ||| |||||| ||| || | | | |||
Sbjct 641098 GCAGCATGGTAGATGGTCTCAAATATC-TGCTTGTTGAGCTCACGGGCCTCAGGGGACTC 641040
Query 2070111 CCACGGCAGGTCCAT--CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATC 2070168
| |||| | || || || || |||||||| || ||||| ||||| || || |||
Sbjct 641039 AAATGGCATGCGCAAGGCAAGGAAA--GCGTCGGCGAGACCCTGGACGCCAACACCAATC 640982
Query 2070169 GGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATC 2070228
|||||||| |||| ||| || ||||||||| | || ||||||||||||| || ||
Sbjct 640981 GGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAATG 640922
Query 2070229 ACGCGGTTGAGGTTG 2070243
| | ||| ||||||
Sbjct 640921 ATTCTGTTCAGGTTG 640907
>seq39
Length=215409
Score = 98.7 bits (108), Expect = 2e-14
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||| ||||| ||||||||||| || || ||| | || |||||||| || ||||||
Sbjct 80464 GCCTCCAATTACCTTGACATCAAGCCTCTTCTTGATGTTGGTTGCAAGACTGTTGCCAAC 80405
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
| |||||||||||||| || || || || || ||||| || |||||
Sbjct 80404 ATGATCAAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTCAACAT 80358
>seq103
Length=87482
Score = 96.9 bits (106), Expect = 5e-14
Identities = 173/253 (68%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| ||||| ||||| || |||||| ||||| |||||||| | |
Sbjct 35584 TGACACCAGCCTTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCA 35525
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||| |||||| | || || || |||||| ||| |||||| || |
Sbjct 35524 ATGAGATGTTCTCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAA 35465
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | |||||||||| ||||| || || ||||||||||| ||| | | ||| ||||
Sbjct 35464 GAGCAACAAGCAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCA 35405
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || |||| | ||| | | ||||||||||||||| ||| || |
Sbjct 35404 TGCCAAGTAGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCAT 35345
Query 794131 CGATGATGATCTG 794143
| | || |||||
Sbjct 35344 CTGTAATAATCTG 35332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915955678324787
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |