Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq6 132 3e-26
seq36 116 2e-21
>seq6
Length=626929
Score = 132 bits (146), Expect = 3e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | ||||||||||||||| ||||| ||||| | ||| |||| ||||
Sbjct 11362 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 11421
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || || ||||| ||||| ||||||||| | || | |||||||||||
Sbjct 11422 CTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 11481
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| |||||| | || | || | ||| || || | ||| || ||
Sbjct 11482 CTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGT 11541
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || ||||||||||| || || ||||||||
Sbjct 11542 CTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 11574
>seq36
Length=230664
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || | ||| | || |||| ||| | ||| ||||||||||||||| ||||| |
Sbjct 21044 CCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCA 21103
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | || |||| || || || || ||||||||||| || || |||||||| | ||
Sbjct 21104 AGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 21163
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || || ||||| | || ||| || ||| |||| | ||| | || ||
Sbjct 21164 ATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACC 21223
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| ||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 21224 TCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Score = 96.9 bits (106), Expect = 2e-15
Identities = 141/197 (72%), Gaps = 8/197 (4%)
Strand=Plus/Plus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
|||||||| ||||| ||||| | ||| |||| | || || || |||||||| || ||
Sbjct 21598 TCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAA 21657
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
||||| || || ||||| | || | ||||||||||| | || || ||||| ||
Sbjct 21658 ATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT 21715
Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
| ||||| ||| | |||||| |||| || |||||||| || || ||||| ||
Sbjct 21716 --TGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTT 21773
Query 34963 TACAAAGATCTGCATGA 34979
|| || ||||||||||
Sbjct 21774 GACGAAAATCTGCATGA 21790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325681951681727
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |