Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq36 107 2e-18 seq6 86.0 5e-12 >seq36 Length=230664 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | ||||| || ||||| ||| | || ||| || Sbjct 21270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 21211 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||||| || ||||||||| | || || ||| Sbjct 21210 GACACAATAGACAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCAG 21151 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || |||||||| ||||| | ||| | || ||||||||| Sbjct 21150 CAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAAC 21091 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| || |||||| |||||||| | ||||| || || Sbjct 21090 ATTCAGAAGGAGTCAACCTTGCACTTGGTGTTGCGTTTGCGTGGTGG 21044 >seq6 Length=626929 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| ||||| || | ||||| || || || ||| |||| |||| || Sbjct 11577 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCT 11518 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || || || || || || ||| | ||| || Sbjct 11517 TCCGACACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGAC 11458 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| |||| || | ||| || || ||||| ||||| | | || |||| |||||| Sbjct 11457 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTAC 11398 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||| || ||||| ||||| || | |||| || || Sbjct 11397 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGG 11348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398863514037037