Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq36 113 3e-20
seq6 100 2e-16
seq5 84.2 2e-11
>seq36
Length=230664
Score = 113 bits (124), Expect = 3e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616
|| || || | |||||||| |||||| || | || || || || |||||||| || ||
Sbjct 21041 TGGCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCT 21100
Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676
|||| || || ||| || || ||||| || || | || | | ||||| || ||
Sbjct 21101 GCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGA 21160
Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735
||||| || ||||||||||| ||| |||| || || | |||| ||||||||| |||
Sbjct 21161 GGAATGCCTTCTTTGTCTTG-AATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTC 21219
Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || || || || || || | ||| || || || ||||||||
Sbjct 21220 CACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Score = 104 bits (114), Expect = 2e-17
Identities = 150/209 (72%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || || | |||||| ||||| || || || ||||||||||| || | || ||
Sbjct 21284 CGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCG 21343
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || | ||||||||||| | |||| | ||||| || || ||||| || || |||
Sbjct 21344 TCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 21403
Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| ||| |||| ||||||| | || | ||| |||||| ||| || || || || ||
Sbjct 21404 TCTTG-AATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAAT 21462
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATA 29779
|| || || || || || || |||| ||
Sbjct 21463 GGTCTTTCCGGTCAAAGTCTTGACAACTA 21491
>seq6
Length=626929
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
||||||||||| || || ||| || || || ||||| || || || | |||||| |
Sbjct 11360 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 11419
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| || ||||||||| | || | || ||||| || || || || ||||| |||
Sbjct 11420 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 11479
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | ||| ||||| | || | ||||| ||| || || || || || ||
Sbjct 11480 TCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATC 11539
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || | ||| || || || |||||||| ||
Sbjct 11540 GTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 11577
>seq5
Length=634825
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658
|| || || || || || || | ||| || ||| || || || ||||||||| | |||
Sbjct 42355 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 42414
Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718
|||| ||||| || || ||||||||||| || || |||| || ||||||| | ||
Sbjct 42415 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 42474
Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777
| |||||||| || || || || || || || || || || ||||| || || ||
Sbjct 42475 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 42533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385206368950353
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |