Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq90 150 1e-30 seq126 96.9 3e-14 seq32 93.3 3e-13 >seq90 Length=99827 Score = 150 bits (166), Expect = 1e-30 Identities = 235/336 (70%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 282207 ||| ||||||||||| ||| ||| | |||| || |||||||||||||| ||||| Sbjct 49911 ATACTTTCTCTTGAAGTCTGTGACAAAGTGGTTTACGAGGCGATTATCAAAATCCTCACC 49852 Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 282267 ||||| | || | || | || || | |||| || | ||| ||||||| || ||| Sbjct 49851 ACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTCCGTCTTCAATAGTCAA 49792 Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 |||| |||||| ||| || || || | ||||| || || ||||| || || Sbjct 49791 GAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAAGATCAGCACATTGCGCTCGCCTTC 49732 Query 282328 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387 || || ||||| || ||||||| ||| |||||||| || |||||||| || | ||| Sbjct 49731 AGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCAGCAGTGGGCTCATTAATGATACGCAA 49672 Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447 | || | || ||||| | || || || || || ||||| | || || |||||||| Sbjct 49671 GATGTTGATTCCGGCAATGGTACCAGCGTCCTTGGTCGCTTGACGCTGCGAGTCGTTAAA 49612 Query 282448 ATATGCAGGAACAGTAATAACGGCATCTGTTACTTC 282483 ||||| |||||||| | || |||||| | | ||| Sbjct 49611 GTATGCTGGAACAGTGACTACAGCATCTTTAATTTC 49576 Score = 134 bits (148), Expect = 1e-25 Identities = 439/669 (66%), Gaps = 11/669 (2%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 |||||||||||||| | ||||||||| |||||||| ||||| || || | | || || Sbjct 50681 ATACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGGGCGCGGGA 50622 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || | | ||| | |||| || || || |||||| | || ||| Sbjct 50621 GGAATGCCAGTAAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGCGCTGGCGCTCA 50562 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATA-CTCT 281619 |||||| | | ||| || || ||| || ||||||||| | || | ||| ||| Sbjct 50561 CCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAAACGTCTCA 50502 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 | || ||| ||||| |||||||||| | ||| | || ||||| ||||||||||| Sbjct 50501 GTCTTCTTTGTG-GGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATCATACCACCAGC 50443 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737 ||||| | || || || ||||| | || |||| || | || | |||| | || Sbjct 50442 AGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTGTTGACTT 50383 Query 281738 TCAT-CAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 || ||| | ||| ||||| ||||| || || | |||||| |||| || ||||| | Sbjct 50382 GGATGTAGTATCTCCAGACAAG-ATAGCAGCCTGTACAGCAGCGCCATTGGCTACAGCCT 50324 Query 281796 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 281855 | ||||| || | ||| | | |||| |||||||| | | || || | || Sbjct 50323 CGTCAGGGTTGATGCTTTTGCTGGGCGTTTTGCCATTGAAGTAGTCGCTAATGAGAT-TC 50265 Query 281856 T-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 | || |||||| |||| || ||||| |||| ||||| || || || || || || Sbjct 50264 TGAACACGAGGAATCCGAGTAGAGCCTCCCACTAGAACAATGTCGTGGACTTGAGACTTG 50205 Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974 || ||||| | || | || || || || | ||| || || |||| ||| Sbjct 50204 TCGAGTTTGGCGTCAGTGAGGACGCGATCCACAGGCTGGAGAGTAGATCGGAACAGATCT 50145 Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 282034 || ||||||||||| || | |||| | | || ||||| || |||||| Sbjct 50144 TGGCATAGTTCTTCGAAACGGGCACGGGTAATCGGTGCGGAGTAGTCAATGCCCTCGAAC 50085 Query 282035 AAAGAATCAACTTCAATCGTAGT-TTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 || ||||||| |||| | || ||| || | || || || ||||| || || ||||| Sbjct 50084 AACGAATCAATCTCAACGTTTGTGTTGTGTTG-AGCGGAGAGGGCACGCTTCGCTCGTTC 50026 Query 282094 ACATGCTGT 282102 ||| || || Sbjct 50025 ACAGGCCGT 50017 >seq126 Length=56475 Score = 96.9 bits (106), Expect = 3e-14 Identities = 192/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || ||||| ||||||||||||| || || | || ||||||||||| || || | Sbjct 41374 ACTTTGAGAATGCCATTGGCATCCAGCTCGAACGACACCTCAATTTGAGGAACACCGCGA 41315 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 |||| || || || ||| | | || |||| || ||||| ||||| || |||| Sbjct 41314 GGAGCGGGGGGAATGCCTGTGAGCTCGAACTTTCCAAGGTTATTGTTATCCTTGGTGAGA 41255 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 |||||| |||||| | | |||||| || |||| || ||||| | | || | Sbjct 41254 GATCGTTCGCCCTCGTAGACCTGGATAAGGACCACAGGCTGGTTATCAGCAGCGGTAGAG 41195 Query 281612 AATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || | ||||| | || | |||||| | ||||| | ||| | |||||||||| Sbjct 41194 AAGA-TCTGGCTCTTGCGAGTAGGAATAGGAGTGTTGCGGGGAATCAACTTGGTCATAAC 41136 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 281712 ||||||| || || | ||||||| ||||| ||||||| Sbjct 41135 TCCACCAGTGGTCTCAATGCCAAGAGTCAGAGGGTTGACATC 41094 >seq32 Length=259671 Score = 93.3 bits (102), Expect = 3e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || || ||||| ||| | ||||| || ||||||||||||||||||||| | || || || Sbjct 100844 GGCAAGGAAGGACGTCTAAGAGGCAACTTGATGGGAAAGCGTGTCGATTTCTCAGCCCGA 100903 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || || ||| |||| ||||| | | ||| | ||||||||||| || | | ||| Sbjct 100904 ACTGTCATCACTGGTGATGCTAATTTATCACTCCACGAAGTTGGTGTCCCACGAAGCATT 100963 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTG 432453 || | | || || | | ||||| |||||| | | ||||||| Sbjct 100964 GCCAGGACGCTCACGTATCCCGAAACAGTAACACCATACAATATTG 101009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740496221249658