Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 132 5e-26 seq36 105 6e-18 >seq6 Length=626929 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| ||| ||| ||| | | | |||||||| Sbjct 11369 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCGAG 11427 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | ||||| ||||||||||| || |||||||| |||||||| ||| Sbjct 11428 CTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGAT 11487 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||||| | || | ||||||| | |||||| |||| ||||| || || || Sbjct 11488 TTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCC 11547 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 11548 TGTGAGGGTCTTGACGAAAATCTGCAT 11574 >seq36 Length=230664 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| || | | ||| |||||| |||||||| || Sbjct 21592 GTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 21651 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| || ||||| ||||| ||||| || || |||||||| ||||| |||| Sbjct 21652 GCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTG 21711 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | ||| || || | |||| ||| |||||||| || ||| Sbjct 21712 ACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTT 21771 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || ||||||||||||||| || Sbjct 21772 TTGACGAAAATCTGCATGACT 21792 Score = 102 bits (112), Expect = 8e-17 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || || |||||| | | ||| ||| ||| || | ||| |||| Sbjct 21302 GTGGACTCCTTCTGGATGTTATAATCGGCGAGCGT--ACGGCCGTCTTCCAACTGTTTGC 21359 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| ||||| |||||||||||||| |||||| | Sbjct 21360 CAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGAATCTTTGATT 21419 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | ||||| |||| ||| | ||| || ||||||| || Sbjct 21420 TGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTCTTTCCGGTCAAAG 21479 Query 133642 TTTTTAC 133648 | || || Sbjct 21480 TCTTGAC 21486 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| || | | || | | | ||||| || Sbjct 21065 AAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCA-TCCTCAAG 21123 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | || || ||||||||||||||||| |||||||| ||||| || Sbjct 21124 CTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAAT 21183 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | || | ||||| | | ||||| || | ||||| ||| || || Sbjct 21184 CTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCC 21243 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 21244 TGTGAGGGTCTTGACGAAGATCTGCAT 21270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483404285136920