Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq6 132 5e-26
seq36 105 6e-18
>seq6
Length=626929
Score = 132 bits (146), Expect = 5e-26
Identities = 155/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | |||| ||| ||||| || ||||| ||| ||| ||| | | | ||||||||
Sbjct 11369 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCGAG 11427
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| || | ||||| ||||||||||| || |||||||| |||||||| |||
Sbjct 11428 CTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGAT 11487
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|| ||||| | || | ||||||| | |||||| |||| ||||| || || ||
Sbjct 11488 TTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCC 11547
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || ||||||||||||||
Sbjct 11548 TGTGAGGGTCTTGACGAAAATCTGCAT 11574
>seq36
Length=230664
Score = 105 bits (116), Expect = 6e-18
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| || || ||||| || ||||| || | | ||| |||||| |||||||| ||
Sbjct 21592 GTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 21651
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| |||| || ||||| ||||| ||||| || || |||||||| ||||| ||||
Sbjct 21652 GCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTG 21711
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | ||||| | | ||| || || | |||| ||| |||||||| || |||
Sbjct 21712 ACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTT 21771
Query 133644 TTTACGAAAATCTGCATGGCT 133664
|| ||||||||||||||| ||
Sbjct 21772 TTGACGAAAATCTGCATGACT 21792
Score = 102 bits (112), Expect = 8e-17
Identities = 136/187 (73%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|||||||| ||||| || || |||||| | | ||| ||| ||| || | ||| ||||
Sbjct 21302 GTGGACTCCTTCTGGATGTTATAATCGGCGAGCGT--ACGGCCGTCTTCCAACTGTTTGC 21359
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| || ||||||||||| ||||| |||||||||||||| |||||| |
Sbjct 21360 CAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGAATCTTTGATT 21419
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | || || | | ||||| |||| ||| | ||| || ||||||| ||
Sbjct 21420 TGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTCTTTCCGGTCAAAG 21479
Query 133642 TTTTTAC 133648
| || ||
Sbjct 21480 TCTTGAC 21486
Score = 100 bits (110), Expect = 3e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||| ||||| ||||| || ||||| || | | || | | | ||||| ||
Sbjct 21065 AAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCA-TCCTCAAG 21123
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| || || ||| | || || ||||||||||||||||| |||||||| ||||| ||
Sbjct 21124 CTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAAT 21183
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|||| ||| | | || | ||||| | | ||||| || | ||||| ||| || ||
Sbjct 21184 CTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCC 21243
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || ||||| ||||||||
Sbjct 21244 TGTGAGGGTCTTGACGAAGATCTGCAT 21270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483404285136920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |