Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 154 2e-31 seq103 141 1e-27 seq7 91.5 2e-12 >seq4 Length=676188 Score = 154 bits (170), Expect = 2e-31 Identities = 339/504 (67%), Gaps = 17/504 (3%) Strand=Plus/Plus Query 259680 AGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACT 259739 |||||| ||||| |||||| | ||||| | | | | |||| || ||| ||||| Sbjct 639856 AGCACAGGGAGGAGCTCGACTCCGCCATTGTCTATGACAGAGATTTCAACTATCAGTACT 639915 Query 259740 TTGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGC 259799 |||| | ||| ||| ||||| || || ||| | || | | ||||||| Sbjct 639916 TTGGCTTCAAGACTTTGGAGCGGTCATATCTTCTCAAGCTCAACGGCAAGATTGTCGAGC 639975 Query 259800 GGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACA 259859 | |||||| | ||| | ||||||||||| | || | |||| || |||| Sbjct 639976 GACCCCAGCACATGATTATGCGTGTCGCTGTCGGGA--TCTGGG------GA----GACA 640023 Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGT-TGTTCACCTCA 259918 || | |||| || || | |||||| | |||||| ||||| | ||||| Sbjct 640024 ATA---TTGAGCGAGTCCTGGAAACCTACCATCTCATGTC-CAGCAAACTCTTCACACAC 640079 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | ||||| || || || || ||||| || | ||| ||||| ||||| || Sbjct 640080 GCCTCACCCACACTATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTC 640139 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || ||||||||||||||||||||||||||| ||||| | Sbjct 640140 GTCGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATG 640199 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| ||| || || ||||| || | ||| | |||||| | ||| || Sbjct 640200 ATCTCCAAGATGGCTGGTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCC 640259 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || ||||||||||| |||||| || | | ||||||||||| ||||| ||| Sbjct 640260 TACATTGCCGGCACCAACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAAC 640319 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 ||||||| | || ||||||||| Sbjct 640320 AACACGGCCAGATATGTCGACCAG 640343 >seq103 Length=87482 Score = 141 bits (156), Expect = 1e-27 Identities = 214/297 (72%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||| || || ||||| ||||| ||| |||| | Sbjct 34668 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATC 34726 Query 1455835 TCGGCGCC-GACACGGTCCACTGGGTG--TCG-CTGAGCGACGACGAGCGCCATTTCATC 1455890 | | || || | | ||||| ||| |||| ||||| ||| |||||||| Sbjct 34727 T-GTCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATC 34785 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 ||| | || || || ||| || ||| || ||||| || ||||||| ||| | Sbjct 34786 TCCCACATTCTGGCATTCTTT-GCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGA 34844 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 ||||| | || |||||| | || ||||| |||| |||||||| ||||||||| Sbjct 34845 GCGCTTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCAT 34904 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || || |||||||| ||||| ||||| ||| | |||||||||||| ||||||| Sbjct 34905 GATGGAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 34961 >seq7 Length=589000 Score = 91.5 bits (100), Expect = 2e-12 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 332874 AGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGG 332933 |||| || |||||||| || ||| |||| |||||| | | | |||| |||||||| Sbjct 268599 AGCGAAGAATGGCACATCGCGACTGAAGGGGCTCGATAATCTTGTTCGACTGGTTGCAGG 268658 Query 332934 CCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTTGG 332992 | | ||||| || || || |||| || | ||||| || |||| | || || ||||| Sbjct 268659 CAAATGCAAATCGAGTTGTGTTGGAATAAATCTCCATAGTTCGAC-GAAGTGCTTGTTGC 268717 Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046 || | | ||| | || ||| || ||||||||||| |||| |||||| || ||| Sbjct 268718 GCACCGGACGTCATGCTGTCTGCTTCGTCGAGGATAATGAGCTTGTGTCGGCCG 268771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177547597126746