Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq36 111 1e-19 seq5 93.3 4e-14 >seq6 Length=626929 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || | || |||||||| || |||||||| |||||| Sbjct 11348 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 11407 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| || | ||||||||||| | || Sbjct 11408 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 11467 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| ||| || ||| | |||| | | |||||| || ||||| Sbjct 11468 ATGCCCTCCTTGTCCTGGATTTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 11526 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || || || | || || || || |||||||| Sbjct 11527 CTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 11574 >seq36 Length=230664 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | ||||||||| || || || |||||| ||||||||||| || || Sbjct 21044 CCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCA 21103 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| || || || || || | ||||||||||| | |||| Sbjct 21104 AGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 21163 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || || ||||| |||||| ||||| |||| | | ||||| |||||||| Sbjct 21164 ATGCCTTCTTTGTCTTGAATCTTTGACTTCA-CGTTGTCTATTGTGTCAGAAGATTCCAC 21222 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || || | || || || || |||||||| Sbjct 21223 CTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| |||||||| | || || |||| |||| ||| || || || || Sbjct 21307 CTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAA 21366 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || |||||||| |||||| || | | | Sbjct 21367 AATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGAATCTTTGATTTGACATT 21426 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || ||||||||||| | || || || || || |||||||| || || Sbjct 21427 GTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 21486 Query 35725 AAATA 35729 || || Sbjct 21487 AACTA 21491 >seq5 Length=634825 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || || ||||| || |||| |||||| | || || |||||||| || ||||| | Sbjct 42353 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 42412 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | |||| | |||||| ||| ||||| || | | | Sbjct 42413 TCAATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGT 42472 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||| || || ||||| | ||||| || ||||||||||| || || || | Sbjct 42473 CGATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGA 42532 Query 35727 A 35727 | Sbjct 42533 A 42533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450778199763640