Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq36 136 4e-27 seq6 125 7e-24 seq4 89.7 5e-13 >seq36 Length=230664 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||||||| | ||| | || || ||||| |||||||||||||| ||| || | Sbjct 21056 CGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCA 21115 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || |||||||| || || || || | ||||||||| ||||| || ||||||||||| Sbjct 21116 TCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTG 21175 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| ||| || || ||| | |||||| || |||||||| || || || ||| Sbjct 21176 TCTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATG 21235 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || | || || ||||| || ||||| Sbjct 21236 GTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| || || || || |||||||| || ||||||||||| | Sbjct 21562 CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCG 21621 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || |||||||||| |||||| || || || || Sbjct 21622 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGA 21681 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | ||||| || || || || Sbjct 21682 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACC 21741 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | ||||| |||||||| ||||| Sbjct 21742 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788 >seq6 Length=626929 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||| ||||| || |||||||||||| | | |||| | Sbjct 11357 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 11416 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| || | |||||||| || || || ||||| || Sbjct 11417 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCC 11476 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || ||||| ||||| ||| | |||||||| || ||||| ||||| || Sbjct 11477 TTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 11536 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | || || |||||||| ||||| ||| Sbjct 11537 ATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTTG 11578 >seq4 Length=676188 Score = 89.7 bits (98), Expect = 5e-13 Identities = 279/427 (65%), Gaps = 19/427 (4%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | |||| || || || || || || || | ||||| | | || Sbjct 639981 CAGCACATGATTATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTCCTG 640040 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 ||||| ||||| | ||||| |||| || || ||||| || ||||| | || | Sbjct 640041 GAAACCTACCATCTCATGTCCAGCAAACTCTTCACACACGCCTCACCCACACTATTCAAC 640100 Query 7684 GCGGGCACAAACGCGCCTCAAT------TGTCCTCGTGTTTTTTGCTAACCATGCGCGAA 7737 || |||||| ||||||| |||| || || || | | |||| || Sbjct 640101 GCTGGCACA------CCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAG 640154 Query 7738 GACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGG 7796 ||||||||||| ||||| || ||||||| | || ||||||| || ||| || | || Sbjct 640155 GACAGCATCGAGGGCATCTATGACACGCT-CAAGACCTGCGCCATGATCTCC-AAGATGG 640212 Query 7797 C-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCA 7855 | || || || || |||| || || | | ||||||| || | ||| | || Sbjct 640213 CTGGTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCCTACATTGCCGGCA 640272 Query 7856 CCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGAC 7915 ||||||| | ||| ||| | |||||| | || || ||||| ||| ||| || Sbjct 640273 CCAACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGAT 640332 Query 7916 ATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGC 7972 |||| |||||||| || ||||| ||||| |||||| || |||||||| |||| Sbjct 640333 ATGTCGACCAGGGTGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGC 640392 Query 7973 ACGCGGA 7979 |||| || Sbjct 640393 ACGCCGA 640399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505381134327160