Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq103 156 6e-33
seq4 123 3e-23
>seq103
Length=87482
Score = 156 bits (172), Expect = 6e-33
Identities = 299/439 (68%), Gaps = 4/439 (1%)
Strand=Plus/Minus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| ||||| ||||| || ||||||||||| || || || ||||| ||||||| || ||
Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
|||||||| ||||| ||||||| | || || || | | || | | || |
Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| | ||| || ||||| || ||||| |||||||| | |||||| || | ||
Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
| ||| | |||||| || ||||||||||| |||||| || || ||||| || |||
Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334
Query 39566 GATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623
|||| | | || | || | | | ||| || || || |||||||| |
Sbjct 35333 --TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTGCAGCAAGCAGGCAA 35276
Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683
|||| || || |||||||| | ||||||||||| || || ||||| || ||||
Sbjct 35275 AGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGGCA 35216
Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743
| | |||||||| || ||||| || || | |||||||| || ||||| || ||||
Sbjct 35215 TCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACCTT 35156
Query 39744 CTACTGCTGCAAATGCAAC 39762
| || || ||||| |||||
Sbjct 35155 CCACGGCAGCAAAAGCAAC 35137
Score = 111 bits (122), Expect = 2e-19
Identities = 224/332 (67%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898
|| || |||||||| ||||| || | || | || || || | || || || |||
Sbjct 35000 GTCTCGATAGCATTGAAGAGGTAGTTGCGTTGAGCATGCTCCTTGATGTAGGTGTCGATT 34941
Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958
|| ||| || |||| || ||||| || || ||| ||||| ||||||||||| ||
Sbjct 34940 AAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGGAATCCGTAAAAGCAA 34881
Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018
| || |||| | ||| || || | || | || |||| || || || || ||
Sbjct 34880 CGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAGTTCTCGTTGACAATG 34821
Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078
|| ||| || ||||| ||||||| | || || |||||||| |||||| ||
Sbjct 34820 CCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATATTTCTCATCGTCATTC 34761
Query 40079 A---ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAC 40135
| || |||||||| | | |||||| || | ||| | ||||| || ||||| ||
Sbjct 34760 AGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCTTCGGCCGTCCAGAAA 34701
Query 40136 GACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167
|| ||||| |||||||||||||| | ||| ||
Sbjct 34700 GAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 34669
>seq4
Length=676188
Score = 123 bits (136), Expect = 3e-23
Identities = 447/694 (64%), Gaps = 28/694 (4%)
Strand=Plus/Minus
Query 69538 TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACT 69597
||| ||| || || ||||| || || ||||||| | ||| || | | | || ||
Sbjct 640561 TCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACG 640502
Query 69598 CGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCT 69657
|| ||||| || |||||||||||||||||||| | || | ||| | | | ||||
Sbjct 640501 CGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCT 640442
Query 69658 TCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCT 69717
|| || || ||| ||| | ||| || ||||| | | ||| | ||||| || ||
Sbjct 640441 TCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCC 640382
Query 69718 AGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTG 69777
| || || || | | || ||||| || || || ||||| || | |||||||| |||
Sbjct 640381 AAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTG 640322
Query 69778 TTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATA 69837
|| || | || | ||||| ||||| | |||||| || | || || || || | |||
Sbjct 640321 TTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATG 640262
Query 69838 TAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAG 69897
|| || | |||||||| | | | || || || || ||||| || |||
Sbjct 640261 TAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCACCAGCCATCTTGGAG 640202
Query 69898 ATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGT-- 69955
|| | || || || | |||||||| || ||||| ||||| || || ||||||
Sbjct 640201 ATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCG 640142
Query 69956 -----TAAG-AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATG 70009
||| |||| |||||| ||||| ||| || || || || || |||| ||
Sbjct 640141 ACGAGGAAGCAAGACGACAGCT-GACAT----TGAGGT---GTGCCAGCGTTGAATAGTG 640090
Query 70010 TAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATT 70069
| || || ||||| ||||| ||| || | |||| ||| ||||| | || |
Sbjct 640089 TGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCT 640030
Query 70070 CTATAT----CCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGT 70125
| |||| || | | || || | ||||||||||| | ||| ||||| |||||
Sbjct 640029 CAATATTGTCTCCCCAG----ATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGC 639974
Query 70126 TCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAA 70185
|| || | || || | || | || ||||| |||| ||| || || |||||
Sbjct 639973 TCGACAATCTTGCCGTTGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAG 639914
Query 70186 TAGTTGTA--TGAAAAGTCTCTTTCGTAAATAAT 70217
|| | || ||||| ||||| || || | |||
Sbjct 639913 TACTGATAGTTGAAA--TCTCTGTCATAGACAAT 639882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686885333478120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |