Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq103 93.3 3e-14 >seq4 Length=676188 Score = 104 bits (114), Expect = 2e-17 Identities = 305/466 (65%), Gaps = 13/466 (3%) Strand=Plus/Plus Query 19357 CTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTT 19416 || || || || || ||| |||||||| || ||||| | || || ||||| | ||| Sbjct 425063 CTATACGGTCCTCCAGGTACCGGAAAAACCTTGATTGCTCGTCAAATTGGTAAAATGCTT 425122 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | | || ||||| || | |||||||||||| | | || || || || |||||| Sbjct 425123 AATGCCCGGCCGCCCAAGGTTATCAATGGTCCTGAAGTACTCAACAAGTACGTGGGTCAA 425182 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 || ||||| ||| | ||| | ||||| ||||| ||| ||| | | || | | || Sbjct 425183 TCTGAAGAGAATATCCGAAAGCTATTTGCAGACGCGGAA-AAGGAGTACAAGGAAAAAGG 425241 Query 19537 CG-CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG 19595 || | ||||| | | ||||| || || | || || |||| || | || || || || Sbjct 425242 CGACGAAAGTAGTCTTCACATCATCATCTTTGACGAGCTGGATGCCGTTTGCAAACAGAG 425301 Query 19596 AGGTTC---------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTC 19646 |||||| ||| | | ||| || ||||| |||||| || || || || || Sbjct 425302 AGGTTCGGGAGCCGGTGGCGGCACTGGCGTCGGTGACAGTGTTGTGAACCAGCTGCTCTC 425361 Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACT 19706 || | || |||||| |||| || || || ||| | | || || ||||| || | Sbjct 425362 CAAGCTTGATGGTGTTGACCAGCTTAACAACATTCTGCTGATAGGAATGACCAACCGGAA 425421 Query 19707 GGAATTAATAGACAGCGC-CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765 || | || ||| || || || | |||| || || || ||| | | |||||||| Sbjct 425422 AGACATGATTGACGATGCGCTCATGA-GACCAGGCCGTTTAGAAGTCCATCTCGAAATTT 425480 Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 | || ||||| ||||||| | ||||| || || || ||||| Sbjct 425481 CTCTGCCAGATGAGCCTGGACGTCTCGAAATCTTCAAGATCCATAC 425526 >seq103 Length=87482 Score = 93.3 bits (102), Expect = 3e-14 Identities = 202/295 (68%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||||||||||||||| || |||| || || ||||| || ||||| | ||| || Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728 Query 43790 ACTAAAGACTTAGCAC-ATTGGA--TTGCATTAAAACCAC-AAGAAAAACATTTTATATC 43845 | ||||| || |||| | |||| | | || || | || ||| |||| || || Sbjct 34729 TCGAAAGA-TTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTC 34787 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 || |||| || |||||||| ||||| || ||||| || || |||||| || Sbjct 34788 CCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCG 34847 Query 43906 GTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 || ||| ||||| ||| | || || || || || ||||| || || || || | Sbjct 34848 CTTCAGCG-GCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 34906 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 | || ||||| || ||||||| ||| ||| | || || || |||||||| || Sbjct 34907 TGGAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 34961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442761361665