Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq4 104 2e-17
seq103 93.3 3e-14
>seq4
Length=676188
Score = 104 bits (114), Expect = 2e-17
Identities = 305/466 (65%), Gaps = 13/466 (3%)
Strand=Plus/Plus
Query 19357 CTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTT 19416
|| || || || || ||| |||||||| || ||||| | || || ||||| | |||
Sbjct 425063 CTATACGGTCCTCCAGGTACCGGAAAAACCTTGATTGCTCGTCAAATTGGTAAAATGCTT 425122
Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476
| | || ||||| || | |||||||||||| | | || || || || ||||||
Sbjct 425123 AATGCCCGGCCGCCCAAGGTTATCAATGGTCCTGAAGTACTCAACAAGTACGTGGGTCAA 425182
Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536
|| ||||| ||| | ||| | ||||| ||||| ||| ||| | | || | | ||
Sbjct 425183 TCTGAAGAGAATATCCGAAAGCTATTTGCAGACGCGGAA-AAGGAGTACAAGGAAAAAGG 425241
Query 19537 CG-CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG 19595
|| | ||||| | | ||||| || || | || || |||| || | || || || ||
Sbjct 425242 CGACGAAAGTAGTCTTCACATCATCATCTTTGACGAGCTGGATGCCGTTTGCAAACAGAG 425301
Query 19596 AGGTTC---------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTC 19646
|||||| ||| | | ||| || ||||| |||||| || || || || ||
Sbjct 425302 AGGTTCGGGAGCCGGTGGCGGCACTGGCGTCGGTGACAGTGTTGTGAACCAGCTGCTCTC 425361
Query 19647 AAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACT 19706
|| | || |||||| |||| || || || ||| | | || || ||||| || |
Sbjct 425362 CAAGCTTGATGGTGTTGACCAGCTTAACAACATTCTGCTGATAGGAATGACCAACCGGAA 425421
Query 19707 GGAATTAATAGACAGCGC-CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765
|| | || ||| || || || | |||| || || || ||| | | ||||||||
Sbjct 425422 AGACATGATTGACGATGCGCTCATGA-GACCAGGCCGTTTAGAAGTCCATCTCGAAATTT 425480
Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811
| || ||||| ||||||| | ||||| || || || |||||
Sbjct 425481 CTCTGCCAGATGAGCCTGGACGTCTCGAAATCTTCAAGATCCATAC 425526
>seq103
Length=87482
Score = 93.3 bits (102), Expect = 3e-14
Identities = 202/295 (68%), Gaps = 7/295 (2%)
Strand=Plus/Plus
Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789
|| ||||||||||||||||| || |||| || || ||||| || ||||| | ||| ||
Sbjct 34669 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 34728
Query 43790 ACTAAAGACTTAGCAC-ATTGGA--TTGCATTAAAACCAC-AAGAAAAACATTTTATATC 43845
| ||||| || |||| | |||| | | || || | || ||| |||| || ||
Sbjct 34729 TCGAAAGA-TTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTC 34787
Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905
|| |||| || |||||||| ||||| || ||||| || || |||||| ||
Sbjct 34788 CCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCG 34847
Query 43906 GTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964
|| ||| ||||| ||| | || || || || || ||||| || || || || |
Sbjct 34848 CTTCAGCG-GCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 34906
Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
| || ||||| || ||||||| ||| ||| | || || || |||||||| ||
Sbjct 34907 TGGAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 34961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397442761361665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |