Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 304 2e-77 seq103 87.8 2e-12 seq23 86.0 8e-12 >seq4 Length=676188 Score = 304 bits (336), Expect = 2e-77 Identities = 1130/1740 (65%), Gaps = 47/1740 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || |||||||| || ||||||| || | ||||| |||| || |||| Sbjct 641695 TAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTG 641636 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATA--CTTTGACTTTGGTCAATGAAGCGCC 110486 ||| || ||| | |||| | ||| | | || |||| |||| ||||| | Sbjct 641635 CCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACT--GGTCGATGAAAGCAC 641578 Query 110487 CCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGTGCGATA 110544 | || | || ||||| | | ||| | | || | |||||||||||| || || Sbjct 641577 CACGGTCAGCAGCCATCTGCACGACGTGTCGTTGAGA--AATTTCCCAAACAGTTTTGTA 641520 Query 110545 GAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCAC 110604 |||| ||||| || | ||||| | | ||||||||| |||||||| | | | Sbjct 641519 GAGAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTCGGCAAT 641460 Query 110605 CATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTG 110664 || | | ||||||| | | ||||| || || || | ||| || || | || Sbjct 641459 GATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCA 641400 Query 110665 CTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTA 110724 |||||||| || |||||||| ||| | | |||| ||||| | ||||| Sbjct 641399 GGGGTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTA 641340 Query 110725 TGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGC 110784 || || ||||| ||||| ||||| | || || | ||| || || || ||||| || || Sbjct 641339 AGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGC 641280 Query 110785 CATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC 110844 | || || ||| |||| || | ||||||||| | ||||| ||| || ||| || Sbjct 641279 GAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACTC 641220 Query 110845 GTAGTTG--AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCG 110902 || | || || ||||| | ||||||||||||||||||| | || | ||| ||| Sbjct 641219 CCAGAGGTCAGAA-GGCTTCACGT-CCCACATGTCAAACTGAAGAATGCCCTCGGAGGCG 641162 Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTC 110961 ||||| ||||||||||| || | ||||| | | |||||||| |||| || Sbjct 641161 GGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAG-AGGCAGT 641103 Query 110962 CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGA 111021 |||| || || || ||||| ||||| || | || | ||| ||| ||| || Sbjct 641102 GAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGGA 641043 Query 111022 ATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 111081 ||||||| ||| | || || | || |||||||| || || || | |||||| Sbjct 641042 CTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAAT 640983 Query 111082 AGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAAT 111141 || | ||||||||| || || || || || ||||| || || ||||| Sbjct 640982 CGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAAT 640923 Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201 || || ||| || || ||| | || |||| || || || || | | || | Sbjct 640922 GATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 640863 Query 111202 AGTGCGAGTCTCTTCATTGACATACTTTGGAAGG----GCGATTGATGCCAAATTGCAAA 111257 ||| ||| | | | | ||| || ||| || | || ||||| ||||||| Sbjct 640862 ---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAAA 640807 Query 111258 CAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAA 111317 |||| |||||| | | |||||| | |||||| || || | |||||| || | Sbjct 640806 CAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGGA 640747 Query 111318 TCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGG 111377 | || ||||| ||||| ||||| |||||| ||||||| |||||||||||||||||| | | Sbjct 640746 TTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAG 640687 Query 111378 GCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACA 111436 | | |||||||| ||||| | | || || | | ||| | | || | ||| | | Sbjct 640686 GATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG-GGCACG---A 640631 Query 111437 ATGG-CGTTGGCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 |||| || | || | ||||| ||| |||||| ||||| || ||||||||||| Sbjct 640630 ATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCG 640571 Query 111494 CCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACC 111552 || ||| | || || || || || || || || | |||| ||| | ||| Sbjct 640570 CCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTT 640512 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-C 111611 | ||| || |||||||||||||| || |||||||| || | || | ||| | | | Sbjct 640511 CTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGC 640452 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || || | ||||| | || || || ||| || ||||||||||| | | ||| |||| Sbjct 640451 ACGGA-CTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGT 640393 Query 111672 GCCATGGCT-CAAG---ATAG--ACTGCGATAGATCCCTTTCGACGCCCAGCTTGATTTA 111725 |||| |||| |||| || | | ||| || || ||| | | ||| | || | | Sbjct 640392 GCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTT--GTTG-CCACCCTGGTCGA 640336 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 |||| | || ||| ||| || || |||||||| ||||| | ||||| || || | Sbjct 640335 CATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCGT 640276 Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 | || || ||| || | |||| | | |||| | || || ||||| | Sbjct 640275 TGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCAC 640216 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 ||||| ||| ||||| || || | | || || ||||||| || | ||| || Sbjct 640215 CAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGT 640156 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 ||||||| || ||| ||||||||| |||| ||| | ||||| ||||| |||| Sbjct 640155 CCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGA 640096 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAA 112023 | || || |||| ||||| |||| | | || |||||| | ||| || |||| Sbjct 640095 ATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATGGTAGGTTTCCAG 640038 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||| ||||| | || || ||| |||| ||||| ||||| | ||||| ||| || Sbjct 640037 GACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGG 639978 >seq103 Length=87482 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||||||||| || || || | ||| || |||||| ||||| Sbjct 35280 GGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACC 35221 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||| | || |||||||||| ||| | |||| ||| || | ||| |||||| | Sbjct 35220 GGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCA-AAAGCACCGCTGAAGAAAA 35162 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCA 122835 |||| ||||| ||||| |||| | ||| | ||||||| | || ||||| | | | Sbjct 35161 TACCTTCCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTG-GATTCTTTGTCCTGA 35103 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTT 122864 | ||| || ||||| | |||||||| Sbjct 35102 ATCCAACGGATAGCCCAATCTGCCTTCTT 35074 >seq23 Length=320936 Score = 86.0 bits (94), Expect = 8e-12 Identities = 294/449 (65%), Gaps = 22/449 (5%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || || | ||| || | |||||| ||||| | || || ||| | || Sbjct 129002 ATCAAAACGCCCGGGACGCATGAGAGCCTTATCAAGAATATCGGCTCGGTTGGTGCCGGC 129061 Query 11512 AATAACCACAATGCCAGTCTCAT---TGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 | || |||| | |||| ||| || |||||||| || || || | ||||| Sbjct 129062 CAGCACGACAA---CTTGCTCACGGGTGTTGAATCCATCCATTTCTGTCAGAATCTGATT 129118 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTG-----CT-T 11622 | || ||||| |||||| || | | || | | || ||| || | Sbjct 129119 CAGCGTAGCTTCTCGCTCATCGTTGCCACCGAAGCCTCGTCCGCTTTCTTGACGAGCTCT 129178 Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 || | ||||| || ||||||||||| | || || ||| ||| | ||| | | Sbjct 129179 ACCAATGGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGC 129238 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CG 11740 ||| ||||| || |||| | | ||| |||||||||||||| || ||||| | | | Sbjct 129239 AAATAGATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATTCGGAACC 129298 Query 11741 GCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11800 || | | || | |||||| ||| |||||||| || ||||| || | || || Sbjct 129299 GCTTA-CGCT-AAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTT 129356 Query 11801 TTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTC 11858 || || |||||||| |||||||| | || || || || |||||||| || |||| Sbjct 129357 TTGCCAGTACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTC 129416 Query 11859 -CAAAATATCTCTCGGGTTGCTTGAGAAA 11886 |||| | |||| || || |||||||| Sbjct 129417 TCAAACT---TCTCAGGCTGTTTGAGAAA 129442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628010544856800