Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 250 3e-61 >seq4 Length=676188 Score = 250 bits (276), Expect = 3e-61 Identities = 1118/1751 (64%), Gaps = 65/1751 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| ||||||||||| ||| | |||||| | | ||||| || | | ||| Sbjct 641696 GTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTT 641637 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | || ||| | |||| | ||| | | ||||| || |||||||| || Sbjct 641636 GCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACC 641577 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAG 118019 || || || ||||| | | || | || | || ||||||| ||||| ||||| Sbjct 641576 ACGGTCAGCAGCCATCTGCACGACGTG--TCGTTGAGAAATTTCCCAAACAGTTTTGTAG 641519 Query 118020 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACC 118079 || || || || | ||||| | |||||| || ||||| ||| || | | Sbjct 641518 AGAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGA---ACCGTTCTCGGCA 641462 Query 118080 ATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 |||| | | ||||||| | | ||||| || || || | |||||| | || || Sbjct 641461 ATGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGC 641402 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 |||||||| || ||||| || ||| || | | || || |||| |||| Sbjct 641401 CAGGGGTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTG 641342 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 || ||||| ||||||||||||||||| | || || | || || || || |||||||| Sbjct 641341 TAAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGG 641282 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAG 118316 || | || || ||| || | || | ||| | || | ||||| ||| | ||| Sbjct 641281 GCGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCAC 641222 Query 118317 TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376 || || | | || | | | |||||| |||||||| || || || | ||| || Sbjct 641221 TCCCAGAGGTCAGAAGGCTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGAGGCG 641162 Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 118433 || || |||||||| || || || || | ||| ||||||||| ||| || Sbjct 641161 GGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG---GCA 641105 Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCG 118493 |||||| || || || || || ||||| || | || | | |||||| | Sbjct 641104 GTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGG 641045 Query 118494 GAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 118553 || ||||| | | || | || || | || |||||||| ||||| || | ||| Sbjct 641044 GACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCA 640985 Query 118554 ATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 118613 || || || |||| ||| || ||||| || || ||||| || || ||| Sbjct 640984 ATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCA 640925 Query 118614 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 118673 || | || || || || || |||| |||| || || ||||| | | | || Sbjct 640924 ATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCG 640865 Query 118674 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAGATTACA 118729 | ||| ||| | | | | ||| ||| ||| || | || |||| || || Sbjct 640864 TA---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCA 640809 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT 118789 |||| | |||||| ||| |||||| | |||||||||||| | ||| || || Sbjct 640808 AACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCG 640749 Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 || || ||||||||||| || || ||| |||| || ||||||||||| |||||| | Sbjct 640748 GATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAA 640689 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCA 118908 || | |||||||| || |||| || || || | | ||||| | || | |||| Sbjct 640688 AGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG-----GGCA 640634 Query 118909 C-AGTGGCGTTGGCTCGCCCCT---CTTC---CTCGTACTTTGTGTAGAGGGCTTCAAAC 118961 | | ||| | || || |||| | || ||| |||||| ||||| || |||||| Sbjct 640633 CGAATGG---TCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAAC 640577 Query 118962 TCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTG 119020 || || || | || | || || || || || | ||||| | |||| ||| | Sbjct 640576 TCCTCGCCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTCCAATC 640518 Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 119080 ||| || ||| || ||||||||||| || || || ||||| || || ||| | ||| Sbjct 640517 ACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATC 640458 Query 119081 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 119140 ||| || ||||||| | || ||||| ||||| || | || || | | ||| Sbjct 640457 ACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATC 640398 Query 119141 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTG 119194 |||||||| || |||| ||| | || | | || | | || ||| |||| Sbjct 640397 GGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCC---AGGTCGCTTGTTGCCACCCTG 640341 Query 119195 GTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTG 119254 || ||||| || || ||| ||| || ||||||||||| ||||||| ||||| ||| Sbjct 640340 GTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGT 640281 Query 119255 GCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCA 119312 || || || || || || ||| | | |||| | | ||||| | || || Sbjct 640280 CCCGTTGGTGCCGGCAATGTAGGAGCC--AGTGGCGCGAATGCGGTGGACATTCAAGCCG 640223 Query 119313 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 119372 ||||| || ||| ||| ||||| ||||| | |||| || | ||||| || ||| Sbjct 640222 ATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCG 640163 Query 119373 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCA 119432 || ||| |||| | ||| ||||||||| ||||| ||| ||||| ||| Sbjct 640162 ATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCA 640103 Query 119433 GCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA--TACCTTGGGACATCTTGTCGTAGG 119490 |||||||| || || |||| ||||| |||| | | || |||||| | ||||| Sbjct 640102 GCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATGGTAGG 640045 Query 119491 TCTCCAAGAC---GGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 | |||| ||| | | ||||| ||| | || |||| | ||| ||||||| || Sbjct 640044 TTTCCAGGACTCGCTCAATATTGTCTCCCCAG---ATCCCGACAGCGACACGCATAATCA 639988 Query 119548 TGTATTGGGGT 119558 ||| |||||| Sbjct 639987 TGTGCTGGGGT 639977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618414072707480