Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 208 9e-49 seq23 105 8e-18 seq103 96.9 4e-15 >seq4 Length=676188 Score = 208 bits (230), Expect = 9e-49 Identities = 899/1394 (64%), Gaps = 33/1394 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278 || ||| ||||| | ||||| || || |||| || |||||| |||| |||| Sbjct 639978 CCCCAGCACATGATTATGCGTGTCGCTGTCGGGATC--TGGGGA-GACAATATTGAGCGA 640034 Query 104279 GTCTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCC 104336 ||| |||| || ||| | |||||| || | | |||| ||||| |||| || | Sbjct 640035 GTCCTGGAAACCTACCATCTCATGTCC--AGCAAACTCTTCACACACGCCTCACCCACAC 640092 Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396 | ||||| ||||| ||||| | || |||| ||||||||| ||| || |||| Sbjct 640093 TATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGG 640152 Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456 ||||| ||| | || ||||||| || || | | || || ||||| ||| || Sbjct 640153 AGGACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGG 640212 Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 104516 |||| ||||| || || | |||| | | |||| | || ||| || | Sbjct 640213 CTGGTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCCTACATTGCCGGCA 640272 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || || ||||| | ||||| |||||||| || || ||| ||| || | | Sbjct 640273 CCAACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGAT 640332 Query 104577 ATGTAAATCAAGCTGGGCGTCGAAAGGGATCTATCGCAGT--CTAT---CTTG-AGCCAT 104630 |||| | || | ||| | | ||| || || ||| | | || |||| |||| | Sbjct 640333 ATGTCGACCAGGGTGG-CAAC--AAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTT 640389 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||||| ||| | | ||||||||||| ||||| || || || | || || | | Sbjct 640390 GGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCC 640449 Query 104691 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 | ||| || ||| | ||| ||||| |||||||| ||||| ||||||||| | || ||| Sbjct 640450 G-TGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAG 640508 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGT 104808 ||| || ||||| |||| | || || || || || || || || | || | Sbjct 640509 AAGAACGGTGATTGGACTCTGATGTGCCCCAACGAATGCCCC-GGCCTGGCTGACTGCTA 640567 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 || ||||||||||| || || || |||||| ||| || || || |||||| Sbjct 640568 CGGCGAGGAGTTTGAGGCTCTCTATGAAAAGTATGAGCGTGAGGGCAAGGGTCGTGCGAC 640627 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | | || | || | | ||| | | || || || | || || ||||| |||| | Sbjct 640628 CATTCGTGCC-CAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATC 640686 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||| ||||| || ||||| ||| ||||| || || ||||| ||||| | Sbjct 640687 CTTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAA 640746 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || ||||| || || || ||||| | || | | | | |||||| |||| Sbjct 640747 TCCGCAGCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTG 640806 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT- 105106 | || ||| | || || | ||||| || | || || | | | | ||| | Sbjct 640807 TTTGCAACTTGGCCTCTCTGGCTCTGCCTGCCTTCGTAGA-CTACAACGAGGGACGCTAC 640865 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 || | | || |||||||| || || | || ||||| |||||| | ||| Sbjct 640866 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCATT 640925 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || |||||||| || || || || || ||| ||||||| || ||| Sbjct 640926 GATGTCAACCACTACCCCGTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGATT 640985 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTC 105285 ||| | || || ||||||||||| || | ||| || | ||| ||| ||||||| || Sbjct 640986 GGTGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCTTGCCTTG-CGCATGCCATTTGAGTC 641044 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 | || || || |||| || |||||||||||||| || || || || || Sbjct 641045 CCCTGAGGCCCGTGAGCTCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCAC 641104 Query 105346 GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 || | || ||||| ||| | || || || ||||||||||| ||||| || Sbjct 641105 TGCCTCTGTCGAATTGGCCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCGC 641164 Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGAC 105463 || | || | ||||| ||||| ||||||| | |||| | | || | || || Sbjct 641165 CTCCGAGGGCATTCTTCAGTTTGACATGTGGG-ACGTGA-AGCCTTCTGACCTCTGGGAG 641222 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 ||| | ||| ||||| | ||||||||| | || |||| ||| || || | || Sbjct 641223 TGGAATAGTCTGAAGGAGCAGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGCC 641282 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| || || || ||| | || || | ||||| ||||| ||||| || || ||| Sbjct 641283 CCCATGCCTACGGCTTCTACCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTAC 641342 Query 105584 ACGACGAACATCTA 105597 ||| | ||||| || Sbjct 641343 ACGTCCAACATTTA 641356 >seq23 Length=320936 Score = 105 bits (116), Expect = 8e-18 Identities = 186/267 (70%), Gaps = 18/267 (7%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||| || ||||||||||| | |||||| ||| ||| | |||| | | |||| || Sbjct 129185 GGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGCAAATAG 129244 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC- 9821 ||| || || || | || |||||||||||||| || ||||| | |||||| Sbjct 129245 ATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATT------CGGAACC 129298 Query 9822 -ATT----GGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 || | ||| || ||| ||||||||| || ||||| || | ||| || || Sbjct 129299 GCTTACGCTAAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTTTT 129358 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-C 9933 || |||||||| |||||||||| || || || ||||||||||| || |||| | Sbjct 129359 GCCAGTACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTCTC 129418 Query 9934 AAAGTATCTCTCAGGTTGCTTAAGAAA 9960 ||| | ||||||| || || ||||| Sbjct 129419 AAACT---TCTCAGGCTGTTTGAGAAA 129442 >seq103 Length=87482 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/229 (71%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAG- 94788 || |||||| || |||| ||||| || ||||||||||| ||| || | |||||| Sbjct 35055 AATAGTTCCTTGCATTCGCAAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGA 35114 Query 94789 -TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 || | ||| || |||| | | || ||||| || || ||||| |||||| Sbjct 35115 ATCCAG---CTTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAG 35171 Query 94848 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906 ||| | || ||| |||| | ||||| |||||||| || | ||||| |||||| || Sbjct 35172 CGGTGCTTT-TGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCT 35230 Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||||| | ||||| ||||| ||||| || ||| ||| ||||| Sbjct 35231 TCTCCAACGAATTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGC 35279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583240874352920