Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq90 178 4e-39 seq36 158 4e-33 seq32 100 9e-16 seq5 95.1 4e-14 seq126 93.3 1e-13 seq6 87.8 5e-12 >seq90 Length=99827 Score = 178 bits (196), Expect = 4e-39 Identities = 230/318 (72%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 |||||||| | ||||| ||||| || ||||| || | |||||| || || || || Sbjct 49585 GATGCTGTAGTCACTGTTCCAGCATACTTTAACGACTCGCAGCGTCAAGCGACCAAGGAC 49644 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 ||||| | |||||| || | || | | | || |||||||| |||||||||||||| Sbjct 49645 GCTGGTACCATTGCCGGAATCAACATCTTGCGTATCATTAATGAGCCCACTGCTGCAGCT 49704 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 ||||| || || ||||| || | | ||| || ||| | || || ||||| | Sbjct 49705 ATTGCGTACGGCCTTGACAAGAAGGCTGAAGGCGAGCGCAATGTGCTGATCTTTGACCTT 49764 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 || || ||||| |||||||| || || | || ||||||| ||||| |||||||| || Sbjct 49765 GGCGGAGGTACCTTTGATGTGTCTCTCTTGACTATTGAAGACGGAATCTTTGAAGTGAAG 49824 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCAT 349906 || ||||||||||| || || | ||||| || |||||||||||||| ||||| || Sbjct 49825 GCCACTGCTGGTGACACCCACTTGGGTGGTGAGGATTTTGATAATCGCCTCGTAAACCAC 49884 Query 349907 TTTGTTAAAGAATTTAAG 349924 ||||| | ||| || ||| Sbjct 49885 TTTGTCACAGACTTCAAG 49902 Score = 143 bits (158), Expect = 8e-29 Identities = 449/689 (65%), Gaps = 15/689 (2%) Strand=Plus/Plus Query 349961 GCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCT----AC 350016 || |||||||| || | || || |||||||| || |||||| || | || || || Sbjct 49999 GCTATGCGTCGTCTTCGCACGGCCTGTGAACGAGCGAAGCGTGCCCTCTCCGCTCAACAC 50058 Query 350017 TACCCAAACCTCTATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTA 350075 || ||||| | ||| |||||||| ||| | || |||| || | || || | | Sbjct 50059 AACACAAACGT----TGAGATTGATTCG-TTGTTCGAGGGCATTGACTACTCCGCACCGA 50113 Query 350076 TTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTG 350135 |||| ||||| || || |||||| |||| ||||| || || | || | | |||| Sbjct 50114 TTACCCGTGCCCGTTTCGAAGAACTATGCCAAGATCTGTTCCGATCTACTCTCCAGCCTG 50173 Query 350136 TGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAG 350195 |||| || | | || || ||| | ||| ||| | | || | ||| ||| Sbjct 50174 TGGATCGCGTCCTCACTGACGCCAAACTCGACAAGTCTCAAGTCCACGACATTGTTCTAG 50233 Query 350196 TTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTT-ACTATCTGAGTTTTTTAATGGC 350254 | || || ||||| || ||||| ||||| | | | || | || | || |||||| Sbjct 50234 TGGGAGGCTCTACTCGGATTCCTCGTGTTCAGAATCTCATTAGC-GACTACTTCAATGGC 50292 Query 350255 AAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314 ||| || | | || || || || || ||||| || |||| |||||||| ||| Sbjct 50293 AAAACGCCCAGCAAAAGCATCAACCCTGACGAGGCTGTAGCCAATGGCGCTGCTGTACAG 50352 Query 350315 GCATCTATTTTATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGAT 350371 || |||| || |||||| ||| | || || || | || | || || || || Sbjct 50353 GCTGCTATCTTGTCTGGAGATACTACATCCAAGTCAACAAACGAAATCTTGCTTCTTGAC 50412 Query 350372 GTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCT 350431 || | || || || || || | |||||| |||||| | ||||| | |||||| Sbjct 50413 GTTGCACCTCTCTCACTAGGCATTGAAACTGCTGGTGGTATGATGACAAAGTTGATTCCT 50472 Query 350432 AGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAG 350491 |||| | || | || ||||| ||| | | || ||||| || ||| ||||||| ||| Sbjct 50473 CGAAACACAACCATTCCCACAAAGAAGACTGAGACGTTTTCGACGTTTTCAGATAACCAG 50532 Query 350492 CCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAA 350551 || | || |||||||| | || ||||| || |||||||| || || || Sbjct 50533 CCTGGCGTCCTCATTCAAGTGTACGAGGGTGAGCGCCAGCGCACTAAGGACAACAACTTG 50592 Query 350552 CTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAA 350611 | || |||| || | || ||||| || ||| | |||||||||||||||||| Sbjct 50593 ATGGGCAAATTCGAACTTACTGGCATTCCTCCCGCGCCCCGCGGAGTTCCTCAGATTGAA 50652 Query 350612 GTCTCTTTCGATATTGATTCAAATGGTAT 350640 || | || ||| ||||| | |||||||| Sbjct 50653 GTTACATTTGATCTTGATGCCAATGGTAT 50681 Score = 104 bits (114), Expect = 7e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738 |||||||||| |||||||| || || || || |||||||| || || |||||||| |||| Sbjct 49867 TATCAAAATCCTCACCACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTC 49808 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 ||||||||||| | || | || |||||||| ||||| || || | ||||| Sbjct 49807 CGTCTTCAATAGTCAAGAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAA 49756 Score = 84.2 bits (92), Expect = 7e-11 Identities = 321/495 (65%), Gaps = 17/495 (3%) Strand=Plus/Minus Query 182811 TTTTCAGCATCCATTGTCATTCTTTCTATTTCATCTTTAGAAAGATGACCTGCATCATTT 182870 |||||||| || | ||| | || || || || || || ||| |||| ||||| Sbjct 50798 TTTTCAGCTTCAGCTACCATGCGCTCGATCTCTTCCTTGGACAGACGACCCTTGTCATTG 50739 Query 182871 GTAATTACTACATTACTAGTTACT--CCAGTTGATTTTTCAAGTGCGCTAACATTTAAAA 182928 || || || | || | | ||| ||||| ||| || || ||| || || | | Sbjct 50738 GTGATGACAATCTTGTTGG--ACTTGCCAGTACCTTTCTCCAGAGCGGACACGTTCATGA 50681 Query 182929 TACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGTG 182988 ||||||| | |||| |||||||| ||||||||||| ||||| || || ||| || | Sbjct 50680 TACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGGGCGCGGGAG 50621 Query 182989 GAATTCCAGTTAAAGT--AAATTCACCTAATTTATTATTATCTTTAGTTCTTGCT--CTC 183044 |||| ||||| |||| |||| || | || || || ||||| | ||| | | Sbjct 50620 GAATGCCAGT--AAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGC--GCTGGCGC 50565 Query 183045 TCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACT 183104 || || || || |||||||| || | ||||| ||||| | | || ||||| Sbjct 50564 TCACCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAAACGTC 50505 Query 183105 TGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAA-CAATTACAGTCATTACTTCTCT 183163 | | || || | ||||| |||| ||||| |||| ||| | ||||| | | | Sbjct 50504 TCAGTCTTCTTTGTGGGAATGGTTGTGTTTCGAGGAATCAACT-TTGTCATCATACCACC 50446 Query 183164 GGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTT 183223 |||||||| | |||| ||| | ||||| || || || | || | || |||| Sbjct 50445 AGCAGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTGTTGA 50386 Query 183224 ATCTGATTTAATAT---CACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGC 183280 | ||| || ||| || || || ||||| || ||||| || |||| || ||||| Sbjct 50385 CTTGGATGTAGTATCTCCAGACAAGATAGCAGCCTGTACAGCAGCGCCATTGGCTACAGC 50326 Query 183281 TTCATCTGGGTTAAT 183295 || || ||||| || Sbjct 50325 CTCGTCAGGGTTGAT 50311 >seq36 Length=230664 Score = 158 bits (174), Expect = 4e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || |||||||| ||||| || || || || || || | Sbjct 21554 TTTGCATGCCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGT 21613 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || ||||| || ||||||||||| || ||||| || || | Sbjct 21614 AGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGT 21673 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||||||||| || || |||||||| || | || ||||| || || | ||||||| Sbjct 21674 CAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATG 21733 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| ||||| || ||||| || ||||||||||| Sbjct 21734 ACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | |||||||||||||| || ||||| || || || |||||||| Sbjct 21268 CATACCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATC 21327 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || ||||| | ||||| ||||| || || ||||| ||||| ||||| Sbjct 21328 GGCGAGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGG 21387 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || || ||||| || | ||| ||||| || || | |||||| | ||| Sbjct 21388 AGGAATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTC 21447 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || || || |||| ||||||||||| | || || |||| Sbjct 21448 CACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACAA 21488 >seq32 Length=259671 Score = 100 bits (110), Expect = 9e-16 Identities = 177/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 378220 AGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACA 378279 |||||||| ||||| ||||||| ||| || ||||||||||| || | ||| | Sbjct 102387 AGTCGTCGCTGGATATATCCAGTTTCGGCAGTCTTGACTGCAGTATCGATGAGACCTTCT 102328 Query 378280 CGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTC 378339 |||||| |||| ||||||||||| || || | || || || |||| | | || | Sbjct 102327 CGACCAGCCATGGCATGGAAGAAAAACTCGGATGGCGTGAGACCACGGAGGTACGAGTTT 102268 Query 378340 TCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGA 378399 |||| ||| || | || | || |||| ||| | ||||| |||| |||| || || Sbjct 102267 TCAACAAAGCCACGAGCTTCGGGGGAATAATCGTCCTTTGTGAAATGCGGTAGGGTTCGG 102208 Query 378400 TTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAA 378456 | | || ||| | ||||| ||||| || || ||| |||| |||| |||| |||| Sbjct 102207 TATTTGAAACCAAAGGGAATACGTTTCCCTTCGACAATCTGCTGACCGACAAGAGCAG-- 102150 Query 378457 ACCATTTGAGCAATATT 378473 ||| |||| ||| || Sbjct 102149 -TCATCTGAGAAATGTT 102134 >seq5 Length=634825 Score = 95.1 bits (104), Expect = 4e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || ||||| || || | | ||||| ||||| ||||| || || ||||||||||| Sbjct 42355 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 42414 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | || ||||| ||||| ||||| || || |||||||| || || | ||| ||||| || Sbjct 42415 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 42474 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | ||||| | || || || || || | ||||| || || | || || || ||| Sbjct 42475 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAA 42534 >seq126 Length=56475 Score = 93.3 bits (102), Expect = 1e-13 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || |||||||| || ||| || || | || || || |||| | || || ||| Sbjct 40389 GCTACCAAAGATGCCGGTGTCATCGCCGGTCTCAACGTCCTCCGAATTGTGAACGAGCCC 40448 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAA-TGAGTGACCAAGaaaaaaaTATTCT 349773 || || || || || || || || || || || | |||| || || | |||| || Sbjct 40449 ACCGCCGCCGCCATCGCTTACGGTCTGGACAAGACTGAGGGAG--AGCGACAAATCATCG 40506 Query 349774 TATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAAT 349833 | || |||| | |||||||||||||| ||||| || || || | |||| |||| | Sbjct 40507 T--TTATGATCTTGGTGGTGGTACTTTCGATGTCTCCCTCCTTTCCATTGATCAGGGTGT 40564 Query 349834 TTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||| || || || ||||||||||| || ||||| ||||| |||||||| || Sbjct 40565 TTTCGAGGTCCTGGCTACTGCTGGTGACACTCATCTGGGTGGTGAAGATTTCGA 40618 >seq6 Length=626929 Score = 87.8 bits (96), Expect = 5e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||| || || || || || || | Sbjct 11347 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGC 11406 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || ||||| || || || Sbjct 11407 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGG 11466 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| ||||| | || || || || || | || || | || || Sbjct 11467 GATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 11526 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || ||||||||||| Sbjct 11527 CTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 11574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515201340999599