Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq90 178 4e-39
seq36 158 4e-33
seq32 100 9e-16
seq5 95.1 4e-14
seq126 93.3 1e-13
seq6 87.8 5e-12
>seq90
Length=99827
Score = 178 bits (196), Expect = 4e-39
Identities = 230/318 (72%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666
|||||||| | ||||| ||||| || ||||| || | |||||| || || || ||
Sbjct 49585 GATGCTGTAGTCACTGTTCCAGCATACTTTAACGACTCGCAGCGTCAAGCGACCAAGGAC 49644
Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726
||||| | |||||| || | || | | | || |||||||| ||||||||||||||
Sbjct 49645 GCTGGTACCATTGCCGGAATCAACATCTTGCGTATCATTAATGAGCCCACTGCTGCAGCT 49704
Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786
||||| || || ||||| || | | ||| || ||| | || || ||||| |
Sbjct 49705 ATTGCGTACGGCCTTGACAAGAAGGCTGAAGGCGAGCGCAATGTGCTGATCTTTGACCTT 49764
Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846
|| || ||||| |||||||| || || | || ||||||| ||||| |||||||| ||
Sbjct 49765 GGCGGAGGTACCTTTGATGTGTCTCTCTTGACTATTGAAGACGGAATCTTTGAAGTGAAG 49824
Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCAT 349906
|| ||||||||||| || || | ||||| || |||||||||||||| ||||| ||
Sbjct 49825 GCCACTGCTGGTGACACCCACTTGGGTGGTGAGGATTTTGATAATCGCCTCGTAAACCAC 49884
Query 349907 TTTGTTAAAGAATTTAAG 349924
||||| | ||| || |||
Sbjct 49885 TTTGTCACAGACTTCAAG 49902
Score = 143 bits (158), Expect = 8e-29
Identities = 449/689 (65%), Gaps = 15/689 (2%)
Strand=Plus/Plus
Query 349961 GCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCT----AC 350016
|| |||||||| || | || || |||||||| || |||||| || | || || ||
Sbjct 49999 GCTATGCGTCGTCTTCGCACGGCCTGTGAACGAGCGAAGCGTGCCCTCTCCGCTCAACAC 50058
Query 350017 TACCCAAACCTCTATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTA 350075
|| ||||| | ||| |||||||| ||| | || |||| || | || || | |
Sbjct 50059 AACACAAACGT----TGAGATTGATTCG-TTGTTCGAGGGCATTGACTACTCCGCACCGA 50113
Query 350076 TTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTG 350135
|||| ||||| || || |||||| |||| ||||| || || | || | | ||||
Sbjct 50114 TTACCCGTGCCCGTTTCGAAGAACTATGCCAAGATCTGTTCCGATCTACTCTCCAGCCTG 50173
Query 350136 TGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAG 350195
|||| || | | || || ||| | ||| ||| | | || | ||| |||
Sbjct 50174 TGGATCGCGTCCTCACTGACGCCAAACTCGACAAGTCTCAAGTCCACGACATTGTTCTAG 50233
Query 350196 TTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTT-ACTATCTGAGTTTTTTAATGGC 350254
| || || ||||| || ||||| ||||| | | | || | || | || ||||||
Sbjct 50234 TGGGAGGCTCTACTCGGATTCCTCGTGTTCAGAATCTCATTAGC-GACTACTTCAATGGC 50292
Query 350255 AAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314
||| || | | || || || || || ||||| || |||| |||||||| |||
Sbjct 50293 AAAACGCCCAGCAAAAGCATCAACCCTGACGAGGCTGTAGCCAATGGCGCTGCTGTACAG 50352
Query 350315 GCATCTATTTTATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGAT 350371
|| |||| || |||||| ||| | || || || | || | || || || ||
Sbjct 50353 GCTGCTATCTTGTCTGGAGATACTACATCCAAGTCAACAAACGAAATCTTGCTTCTTGAC 50412
Query 350372 GTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCT 350431
|| | || || || || || | |||||| |||||| | ||||| | ||||||
Sbjct 50413 GTTGCACCTCTCTCACTAGGCATTGAAACTGCTGGTGGTATGATGACAAAGTTGATTCCT 50472
Query 350432 AGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAG 350491
|||| | || | || ||||| ||| | | || ||||| || ||| ||||||| |||
Sbjct 50473 CGAAACACAACCATTCCCACAAAGAAGACTGAGACGTTTTCGACGTTTTCAGATAACCAG 50532
Query 350492 CCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAA 350551
|| | || |||||||| | || ||||| || |||||||| || || ||
Sbjct 50533 CCTGGCGTCCTCATTCAAGTGTACGAGGGTGAGCGCCAGCGCACTAAGGACAACAACTTG 50592
Query 350552 CTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAA 350611
| || |||| || | || ||||| || ||| | ||||||||||||||||||
Sbjct 50593 ATGGGCAAATTCGAACTTACTGGCATTCCTCCCGCGCCCCGCGGAGTTCCTCAGATTGAA 50652
Query 350612 GTCTCTTTCGATATTGATTCAAATGGTAT 350640
|| | || ||| ||||| | ||||||||
Sbjct 50653 GTTACATTTGATCTTGATGCCAATGGTAT 50681
Score = 104 bits (114), Expect = 7e-17
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738
|||||||||| |||||||| || || || || |||||||| || || |||||||| ||||
Sbjct 49867 TATCAAAATCCTCACCACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTC 49808
Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790
||||||||||| | || | || |||||||| ||||| || || | |||||
Sbjct 49807 CGTCTTCAATAGTCAAGAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAA 49756
Score = 84.2 bits (92), Expect = 7e-11
Identities = 321/495 (65%), Gaps = 17/495 (3%)
Strand=Plus/Minus
Query 182811 TTTTCAGCATCCATTGTCATTCTTTCTATTTCATCTTTAGAAAGATGACCTGCATCATTT 182870
|||||||| || | ||| | || || || || || || ||| |||| |||||
Sbjct 50798 TTTTCAGCTTCAGCTACCATGCGCTCGATCTCTTCCTTGGACAGACGACCCTTGTCATTG 50739
Query 182871 GTAATTACTACATTACTAGTTACT--CCAGTTGATTTTTCAAGTGCGCTAACATTTAAAA 182928
|| || || | || | | ||| ||||| ||| || || ||| || || | |
Sbjct 50738 GTGATGACAATCTTGTTGG--ACTTGCCAGTACCTTTCTCCAGAGCGGACACGTTCATGA 50681
Query 182929 TACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGTG 182988
||||||| | |||| |||||||| ||||||||||| ||||| || || ||| || |
Sbjct 50680 TACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGGGCGCGGGAG 50621
Query 182989 GAATTCCAGTTAAAGT--AAATTCACCTAATTTATTATTATCTTTAGTTCTTGCT--CTC 183044
|||| ||||| |||| |||| || | || || || ||||| | ||| | |
Sbjct 50620 GAATGCCAGT--AAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGC--GCTGGCGC 50565
Query 183045 TCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAAAAAACT 183104
|| || || || |||||||| || | ||||| ||||| | | || |||||
Sbjct 50564 TCACCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAAACGTC 50505
Query 183105 TGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAA-CAATTACAGTCATTACTTCTCT 183163
| | || || | ||||| |||| ||||| |||| ||| | ||||| | | |
Sbjct 50504 TCAGTCTTCTTTGTGGGAATGGTTGTGTTTCGAGGAATCAACT-TTGTCATCATACCACC 50446
Query 183164 GGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTT 183223
|||||||| | |||| ||| | ||||| || || || | || | || ||||
Sbjct 50445 AGCAGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTGTTGA 50386
Query 183224 ATCTGATTTAATAT---CACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGC 183280
| ||| || ||| || || || ||||| || ||||| || |||| || |||||
Sbjct 50385 CTTGGATGTAGTATCTCCAGACAAGATAGCAGCCTGTACAGCAGCGCCATTGGCTACAGC 50326
Query 183281 TTCATCTGGGTTAAT 183295
|| || ||||| ||
Sbjct 50325 CTCGTCAGGGTTGAT 50311
>seq36
Length=230664
Score = 158 bits (174), Expect = 4e-33
Identities = 176/235 (75%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | | || |||||||| ||||| || || || || || || |
Sbjct 21554 TTTGCATGCCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGT 21613
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | | || || || || ||||| || ||||||||||| || ||||| || || |
Sbjct 21614 AGTCTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGT 21673
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||||||||| || || |||||||| || | || ||||| || || | |||||||
Sbjct 21674 CAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATG 21733
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| || | ||||| ||||| || ||||| || |||||||||||
Sbjct 21734 ACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
Score = 156 bits (172), Expect = 1e-32
Identities = 167/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||| ||||| | | |||||||||||||| || ||||| || || || ||||||||
Sbjct 21268 CATACCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATC 21327
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | || || || ||||| | ||||| ||||| || || ||||| ||||| |||||
Sbjct 21328 GGCGAGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGG 21387
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| ||||| || || ||||| || | ||| ||||| || || | |||||| | |||
Sbjct 21388 AGGAATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTC 21447
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727
|| || || |||| ||||||||||| | || || ||||
Sbjct 21448 CACCTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGACAA 21488
>seq32
Length=259671
Score = 100 bits (110), Expect = 9e-16
Identities = 177/257 (69%), Gaps = 6/257 (2%)
Strand=Plus/Minus
Query 378220 AGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACA 378279
|||||||| ||||| ||||||| ||| || ||||||||||| || | ||| |
Sbjct 102387 AGTCGTCGCTGGATATATCCAGTTTCGGCAGTCTTGACTGCAGTATCGATGAGACCTTCT 102328
Query 378280 CGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTC 378339
|||||| |||| ||||||||||| || || | || || || |||| | | || |
Sbjct 102327 CGACCAGCCATGGCATGGAAGAAAAACTCGGATGGCGTGAGACCACGGAGGTACGAGTTT 102268
Query 378340 TCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGA 378399
|||| ||| || | || | || |||| ||| | ||||| |||| |||| || ||
Sbjct 102267 TCAACAAAGCCACGAGCTTCGGGGGAATAATCGTCCTTTGTGAAATGCGGTAGGGTTCGG 102208
Query 378400 TTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAA 378456
| | || ||| | ||||| ||||| || || ||| |||| |||| |||| ||||
Sbjct 102207 TATTTGAAACCAAAGGGAATACGTTTCCCTTCGACAATCTGCTGACCGACAAGAGCAG-- 102150
Query 378457 ACCATTTGAGCAATATT 378473
||| |||| ||| ||
Sbjct 102149 -TCATCTGAGAAATGTT 102134
>seq5
Length=634825
Score = 95.1 bits (104), Expect = 4e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || ||||| || || | | ||||| ||||| ||||| || || |||||||||||
Sbjct 42355 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 42414
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
| || ||||| ||||| ||||| || || |||||||| || || | ||| ||||| ||
Sbjct 42415 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 42474
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | ||||| | || || || || || | ||||| || || | || || || |||
Sbjct 42475 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAA 42534
>seq126
Length=56475
Score = 93.3 bits (102), Expect = 1e-13
Identities = 163/234 (70%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714
|| || |||||||| || ||| || || | || || || |||| | || || |||
Sbjct 40389 GCTACCAAAGATGCCGGTGTCATCGCCGGTCTCAACGTCCTCCGAATTGTGAACGAGCCC 40448
Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAA-TGAGTGACCAAGaaaaaaaTATTCT 349773
|| || || || || || || || || || || | |||| || || | |||| ||
Sbjct 40449 ACCGCCGCCGCCATCGCTTACGGTCTGGACAAGACTGAGGGAG--AGCGACAAATCATCG 40506
Query 349774 TATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAAT 349833
| || |||| | |||||||||||||| ||||| || || || | |||| |||| |
Sbjct 40507 T--TTATGATCTTGGTGGTGGTACTTTCGATGTCTCCCTCCTTTCCATTGATCAGGGTGT 40564
Query 349834 TTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
||| || || || ||||||||||| || ||||| ||||| |||||||| ||
Sbjct 40565 TTTCGAGGTCCTGGCTACTGCTGGTGACACTCATCTGGGTGGTGAAGATTTCGA 40618
>seq6
Length=626929
Score = 87.8 bits (96), Expect = 5e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || | || || || ||| || || || || || || |
Sbjct 11347 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGC 11406
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || ||||| || || || || ||||||||||| || || ||||| || || ||
Sbjct 11407 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGG 11466
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|| || || || ||||| ||||| | || || || || || | || || | || ||
Sbjct 11467 GATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 11526
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | ||||| || || || || || || |||||||||||
Sbjct 11527 CTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 11574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515201340999599
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