Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 381 6e-101 >seq4 Length=676188 Score = 381 bits (422), Expect = 6e-101 Identities = 950/1431 (66%), Gaps = 60/1431 (4%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 ||| || || |||||| ||||| |||| ||||||| |||||| |||||||| ||| Sbjct 641384 GAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACTC 641325 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 ||||| || | ||||| | ||| || || || |||||||| |||| ||| || || || Sbjct 641324 ATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAGTT 641265 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGT------CCCAAAATTCATTCGC 78680 |||| |||||| |||||||| |||| || | | |||| | ||| | Sbjct 641264 GCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAGAAGG 641205 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740 | | |||||||||| ||||| || |||||||| || || || |||| || || Sbjct 641204 CTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGAGGCGGGAGAGCCCTCAAAGGT 641145 Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACAC 78800 ||||| ||| | ||||||||| | |||| || | ||||| || ||||| | Sbjct 641144 AGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAGGCAGTGAGGGCAGCATGGTAGAT 641085 Query 78801 AGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGA- 78859 | ||| || || |||||||||||| || |||| | || || | | || | Sbjct 641084 GGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGGACTCAAATGGCATGCGCAA 641025 Query 78860 -GCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATG 78918 ||| | ||| | ||||| || ||||||||||| | | | ||||| ||||| |||||| Sbjct 641024 GGCA--AGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAATCGGCCGGTGTCGCATG 640967 Query 78919 TTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTA 78978 ||||| || |||||| ||| | ||||| ||| ||| |||| | ||||||||| Sbjct 640966 TTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAATGATTCTGTTCAGGTTG 640907 Query 78979 CGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATG 79038 || |||||| | || ||||||| | || ||| || | | ||| | | || Sbjct 640906 CGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCG---TCCCTCGTTG 640850 Query 79039 AAAGTC------GGTAGGCACAGC----GATGCCAGGTTGCACACGGCCGTCTCGTCCGG 79088 | ||| || ||||| ||| || |||| |||||| || || ||| || || Sbjct 640849 TA-GTCTACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAAACAGCGACCTCATCAGG 640791 Query 79089 GCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTT 79148 | ||| ||||| ||||| ||||| | || || ||| || || | |||||| Sbjct 640790 GGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGGATTGTTCCCAAGTTCTT 640731 Query 79149 CTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAAC 79208 ||||||||||||| ||| ||||| ||||||||| |||| | || | || ||||| Sbjct 640730 CTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAGGATTACCCGTCTCTGT 640671 Query 79209 CTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACC 79268 ||| || || | | || ||||| | | |||| || | | | | || |||| Sbjct 640670 CTGGGCCTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAA-----TGGTCGCAC-GACC 640617 Query 79269 CTGTGCG---ACG----TACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGG 79321 || ||| ||| ||| | || | | | || |||| || ||| || | Sbjct 640616 CT-TGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAG 640558 Query 79322 GCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCT 79381 |||||| ||||| |||| ||||||||||| ||| || ||| |||||| || || Sbjct 640557 CCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCT 640498 Query 79382 CCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGT 79441 |||||| || || || ||||| || || ||| | || || ||| | || || | Sbjct 640497 TCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCT 640438 Query 79442 CGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGAT 79501 ||| || ||| |||| || || || || | | ||||||||||| ||||||| | Sbjct 640437 TGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGT 640378 Query 79502 AGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGT 79561 | ||||| || | || |||||| ||| ||||||| ||| || | ||||||||||| Sbjct 640377 AAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGT 640318 Query 79562 TGAAAACTCGGAGCATGGGCACGATGCCGTCGG-CGACGCCGTTCGTCCCGTTGATTCGT 79620 ||||||| || |||||||| | || || | || || | ||||| || ||| || Sbjct 640317 TGAAAACACGAAGCATGGGAATGACACCATTGGACGTC-CCGTTGGTGCCGGCAATGTAG 640259 Query 79621 GTACCGCTCGCCCGAATGTTCGAGCAGTGG--ATT----CCGATGCCCCCGGACCACTTG 79674 | || | || ||||| || |||| ||| ||||| || || | | |||| Sbjct 640258 GAGCCAGTGGCGCGAAT------GCGGTGGACATTCAAGCCGATACCACCAGCCATCTTG 640205 Query 79675 GAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATA 79734 ||||| ||||| ||||||||| || |||||||||||||| ||| |||||||| Sbjct 640204 GAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATG 640145 Query 79735 GCGACCAGGAAGCAGCTCGACATCTG----TGGGTTGTTCGTACCGGCGTTGAAGAGGGT 79790 |||| |||||||| ||||| ||| || | | || || |||||||| || || Sbjct 640144 TCGACGAGGAAGCAAGACGACAGCTGACATTGAGGT----GTGCCAGCGTTGAATAGTGT 640089 Query 79791 CGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGG 79850 || | ||||| ||||||| || | ||| |||| ||| || ||| ||| ||| Sbjct 640088 GGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTC 640029 Query 79851 GAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 | | ||| || ||| ||||| ||||| ||||| | | || |||||| Sbjct 640028 AATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGG 639978 Score = 334 bits (370), Expect = 8e-87 Identities = 922/1403 (66%), Gaps = 34/1403 (2%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| ||||| ||||| ||| || ||| | | |||||||| || || ||| | Sbjct 639993 ATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTCCTGGAAACCTACCAT 640052 Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236 || ||| |||| || ||||||| ||||| | || || || |||||||| || || Sbjct 640053 CTCATGT-CCAGCAAACTCTTCACACACGCCTCACCCACACTATTCAACGCTGGCACACC 640111 Query 19237 CAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCAT 19296 | ||| ||||| || ||||| || | |||||||| |||||||| |||||||| Sbjct 640112 TCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAGGACAGCATCGAGGGCAT 640171 Query 19297 CTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG---GA- 19352 ||| || ||||||||| ||||| ||||||||| | | || |||||||| || Sbjct 640172 CTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAA 640231 Query 19353 --TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGC 19410 ||||| || || || | | ||| | || || || ||||| | Sbjct 640232 TGTCCACCGC------ATTCGCGCCACTGGCTCCTACATTGCCGGCACCAACGGGACGTC 640285 Query 19411 CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGG 19470 | | ||| || | || ||||| || || ||||||||||||||||| || ||| ||||||| Sbjct 640286 CAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGG 640345 Query 19471 GGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCAT 19530 ||| ||| || ||| | || ||||| ||| | ||||| |||||||| || || | Sbjct 640346 TGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTT 640405 Query 19531 GGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTT 19590 || ||||| || |||| ||| || || | || || | || ||| || | || Sbjct 640406 TGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCCGTGCTCGTGATTTATT 640465 Query 19591 CACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCA 19650 | || | |||||||| || || |||||| || || |||||| ||| || ||| Sbjct 640466 CCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAGAACGGTGATTGGAC 640525 Query 19651 CCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGA 19710 ||||||||||| |||||||||| ||||| | ||| ||||||||||| ||| | | Sbjct 640526 TCTGATGTGCCCCAACGAATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGC 640585 Query 19711 GTTGTACCGGACTTACGTAGC-CCAGGGC-CGGTTCAAGAAGGTGGTCCGGGCCCGGGAC 19768 | || | || | ||| ||||| || || | | | || |||| | | Sbjct 640586 TCTCTATGAAAAGTATG-AGCGTGAGGGCAAGGGTCGTG-CGACCATTCGTGCCCAGAAG 640643 Query 19769 GTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAG 19828 ||||| || | |||| | |||| ||||| || | || | |||| ||||||| Sbjct 640644 CTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATCCTTTCATGCTCTACAAG 640703 Query 19829 GACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTG 19888 || ||| ||| ||| || ||||||||| | || | ||| |||||||| Sbjct 640704 GATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAATCCGCAGCTCCAACCTT 640763 Query 19889 TGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 || || ||||| | ||| || || || ||| || || || || |||| || Sbjct 640764 TGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTGTTTGCAACTTGGCCTCT 640823 Query 19949 CTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGACTTTGCCAAATTGTAC 20002 ||| ||||| | ||||| ||| | || |||||| || | || Sbjct 640824 CTGGCTCTGCCTGCCTTCGTAGACTACAACGAGGGACGCTACGACTTCCAGAAGCTCCAC 640883 Query 20003 GAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCG 20062 ||||| |||| |||||| || || ||||| | |||| ||| ||| ||||| Sbjct 640884 GAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCATTGATGTCAACCACTACCCC 640943 Query 20063 ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGC 20122 | ||| ||| || || || ||||| ||||||||||| | | ||||||||||| Sbjct 640944 GTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGATTGGTGTTGGCGTCCAGGGT 641003 Query 20123 CTGGCCGACGTTTTCATGATGC--TCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGC 20180 || ||||||| |||| | ||| | || | |||| || || |||| || |||| Sbjct 641004 CTCGCCGACGCTTTCCT--TGCCTTGCGCATGCCATTTGAGTCCCCTGAGGCCCGTGAGC 641061 Query 20181 TCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCG 20240 |||||||| || || ||| || | ||||| || |||||| | || |||| | | Sbjct 641062 TCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCACTGCCTCTGTCGAATTGG 641121 Query 20241 CCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCC 20300 |||| ||| | || || ||| || || |||| || ||||| |||||||| || || | Sbjct 641122 CCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCGCCTCCGAGGGCATTCTTC 641181 Query 20301 AGCCGGACATGTGGGGCGTCA------CTGAGAATGAGTTTTGGAGCGCCCTCAAGGTTG 20354 || |||||||||| ||| | |||| | |||| || |||| Sbjct 641182 AGTTTGACATGTGGGACGTGAAGCCTTCTGACCTCTGGGAGTGGAATAGTCTGAAGGAGC 641241 Query 20355 AGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGA 20414 |||||||| || || |||||||||| |||| |||| |||||||| || || || | Sbjct 641242 AGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGCCCCCATGCCTACGGCTTCTA 641301 Query 20415 CCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGC 20474 || | ||||| | || ||||| ||| |||||||| |||||| ||||||| ||| | Sbjct 641302 CCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTACACGTCCAACATTTACCAAC 641361 Query 20475 GTCGTACACTGGCCGGTGAGTTC 20497 | ||| ||||| ||||| ||| Sbjct 641362 GCCGTGTCCTGGCAGGTGAATTC 641384 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || ||||| |||||||||||||||||||| ||| ||||| ||| | |||||| Sbjct 641704 GTGCGCAAGTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAA 641645 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | | || | || |||| ||||| || |||||||||||||||||| Sbjct 641644 GTGATCTTGCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATG 641585 Query 78310 TACGCACCGCGGTCGGCCGCCAT 78332 | ||||| ||||| || ||||| Sbjct 641584 AAAGCACCACGGTCAGCAGCCAT 641562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 20672 ATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAG 20731 ||||| || || || || || | |||||||||||||||||| || || | |||| || Sbjct 641562 ATGGCTGCTGACCGTGGTGCTTTCATCGACCAGTCCCAGTCTCTTAACATTCACATGAAG 641621 Query 20732 AATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAG 20791 |||| | ||| ||| | | |||||||| | ||||||| | ||| |||||| Sbjct 641622 GATCCCACTATGGGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAG 641681 Query 20792 ACGGGCATGTACTATCTGCGGACCCGAGC 20820 |||||||||||||| |||| || | ||| Sbjct 641682 ACGGGCATGTACTACTTGCGCACGCAAGC 641710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548506061021520