Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 214 2e-50 >seq4 Length=676188 Score = 214 bits (236), Expect = 2e-50 Identities = 364/516 (71%), Gaps = 10/516 (2%) Strand=Plus/Plus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| || |||||| | || || || ||||||||||| || ||| |||| ||||| Sbjct 640070 CTTCACACACGCCTCACCCACACTATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTC 640129 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 |||||||| || | |||||||| ||| ||||| |||||||| || ||||||||| Sbjct 640130 TTGCTTCCTCGTCGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACGCTCAAGAC 640189 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGT 53449 || ||| ||||||||| | | ||||||||||| | | || || | || | || Sbjct 640190 CTGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAA-TG-TCCACCGCATTCGC 640247 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG-CCGATGGAATCGTGCCTATGCT 53508 || | ||| | || || || ||||| | || || |||| || | || ||||| Sbjct 640248 GCCACTGGCTCCTACATTGCCGGCACCAACGG-GACGTCCAATGGTGTCATTCCCATGCT 640306 Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTC 53568 || || ||||||||||||||| | || ||| |||||||||| ||||| || | Sbjct 640307 TCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGGTGGCAACAAGCGACCTGGCGC 640366 Query 53569 GTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT 53628 || ||||| ||| | ||||| ||||||||||| | | ||||| || || |||| Sbjct 640367 TTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAA 640426 Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 |||||| || | ||||| | || ||| ||||| | || ||||| |||||||| | Sbjct 640427 GAATCACGGCAAGGAAGAAGTCCG-TGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCG 640485 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 | || |||||| | || |||||| ||| || ||| ||||||||||| ||||| | Sbjct 640486 ATCTTTTCATGAAGCGCGTCGAGAAGAACGGTGATTGGACTCTGATGTGCCCCAACGAAT 640545 Query 53748 GCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782 |||||||||| | | || |||||| ||||||||| Sbjct 640546 GCCCCGGCCTGGCTGACTG-CTACGGCGAGGAGTTT 640580 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 |||||| |||||||| | ||||||||||||||||||||| ||||| |||| || |||| Sbjct 641567 TGCTGACCGTGGTGCTTTCATCGACCAGTCCCAGTCTCTTAACATTCACATGAAGGATCC 641626 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | || ||||||||| ||| ||||| ||| ||||||||||| Sbjct 641627 CACTATGGGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAGACGGG 641686 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| |||| || Sbjct 641687 CATGTACTACTTGCGCAC 641704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547197305733400