Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq4 214 2e-50
>seq4
Length=676188
Score = 214 bits (236), Expect = 2e-50
Identities = 364/516 (71%), Gaps = 10/516 (2%)
Strand=Plus/Plus
Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331
||| || |||||| | || || || ||||||||||| || ||| |||| |||||
Sbjct 640070 CTTCACACACGCCTCACCCACACTATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTC 640129
Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391
|||||||| || | |||||||| ||| ||||| |||||||| || |||||||||
Sbjct 640130 TTGCTTCCTCGTCGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACGCTCAAGAC 640189
Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGT 53449
|| ||| ||||||||| | | ||||||||||| | | || || | || | ||
Sbjct 640190 CTGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAA-TG-TCCACCGCATTCGC 640247
Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG-CCGATGGAATCGTGCCTATGCT 53508
|| | ||| | || || || ||||| | || || |||| || | || |||||
Sbjct 640248 GCCACTGGCTCCTACATTGCCGGCACCAACGG-GACGTCCAATGGTGTCATTCCCATGCT 640306
Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTC 53568
|| || ||||||||||||||| | || ||| |||||||||| ||||| || |
Sbjct 640307 TCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGGTGGCAACAAGCGACCTGGCGC 640366
Query 53569 GTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT 53628
|| ||||| ||| | ||||| ||||||||||| | | ||||| || || ||||
Sbjct 640367 TTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAA 640426
Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687
|||||| || | ||||| | || ||| ||||| | || ||||| |||||||| |
Sbjct 640427 GAATCACGGCAAGGAAGAAGTCCG-TGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCG 640485
Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747
| || |||||| | || |||||| ||| || ||| ||||||||||| ||||| |
Sbjct 640486 ATCTTTTCATGAAGCGCGTCGAGAAGAACGGTGATTGGACTCTGATGTGCCCCAACGAAT 640545
Query 53748 GCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782
|||||||||| | | || |||||| |||||||||
Sbjct 640546 GCCCCGGCCTGGCTGACTG-CTACGGCGAGGAGTTT 640580
Score = 114 bits (126), Expect = 1e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|||||| |||||||| | ||||||||||||||||||||| ||||| |||| || ||||
Sbjct 641567 TGCTGACCGTGGTGCTTTCATCGACCAGTCCCAGTCTCTTAACATTCACATGAAGGATCC 641626
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| ||| |||| | | || ||||||||| ||| ||||| ||| |||||||||||
Sbjct 641627 CACTATGGGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAGACGGG 641686
Query 55906 TATGTACTATCTGCGGAC 55923
|||||||| |||| ||
Sbjct 641687 CATGTACTACTTGCGCAC 641704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547197305733400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |