Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4 293 3e-74
seq36 212 7e-50
seq6 152 6e-32
seq5 123 3e-23
>seq4
Length=676188
Score = 293 bits (324), Expect = 3e-74
Identities = 1138/1758 (65%), Gaps = 73/1758 (4%)
Strand=Plus/Minus
Query 80036 GCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAG 80095
|||| |||| |||||||||||||||||||||||| ||||||||| | |||||| |
Sbjct 641706 GCGTGCGCAAGTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGG 641647
Query 80096 AACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155
|| ||| ||| | | ||||| | || |||| ||||| |||||||| ||||| ||
Sbjct 641646 AAGTGATCTTGCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGA 641587
Query 80156 TGAAAGCCCCACGATCTGCCGCCATTT-CAATAATTGACTTTTGTGGAATTTCCCATACT 80214
||||||| ||||| || || ||||| | || | || | || | | ||||||||| ||
Sbjct 641586 TGAAAGCACCACGGTCAGCAGCCATCTGCACGACGTGTCGTT-GAGAAATTTCCCAAACA 641528
Query 80215 GTACGATACAC--CTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGT 80272
|| || | ||| || | || | || |||| | | | | | || |||||
Sbjct 641527 GTTTTGTAGAGAGCTTT-GATG-TCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGT 641470
Query 80273 CCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTT 80329
|| |||| | || |||| || | ||| | || | | | |||||||
Sbjct 641469 TCTCGGCAATGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTT 641410
Query 80330 TCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACA 80386
||| || | | ||| || | || | || || || ||| || || | || |
Sbjct 641409 TCAGCAGCCAGGGGTTGACAACCTGGA---ATTCACCTGCCAGGACACGGCGTTGGTAAA 641353
Query 80387 GGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCG 80446
||| | ||||||||||| || ||| ||||| || || ||||||| || ||||
Sbjct 641352 TGTTGGACGTGTAAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCG 641293
Query 80447 TCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCA 80506
| ||||| ||| ||| || |||||| || || | || |||| |||||| | ||| ||
Sbjct 641292 TAGGCATGGGGGCGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCA 641233
Query 80507 AA----TCTGA--CCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCAA 80558
| || ||| | ||| || ||| | || |||||||||| ||| |
Sbjct 641232 GACTATTCCACTCCCAGAGGTCAG----AAGGCT-TCACGTCCCACATGTCAAACTGAAG 641178
Query 80559 GATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAG 80618
|||||||| || || ||||| ||| | || || ||| || || | | ||||||||
Sbjct 641177 AATGCCCTCGGAGGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAA 641118
Query 80619 CTC-ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACAC 80677
|| ||| || | | ||||| || || || ||| |||||| | |||||| |
Sbjct 641117 TTCGACA-GAGGCAGTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCT 641059
Query 80678 CGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCT 80737
| || |||| ||| || || | || || || | ||| |||| || || ||||
Sbjct 641058 CACGGGCCTCAGGGGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCT 640999
Query 80738 GAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC--GGCCTCCGGAATTGG 80795
| ||||| | | ||||| ||||| ||| |||| | | | || ||||||| | | ||
Sbjct 640998 GGACGCCAACACCAATCGGCCGGTGTCGCATGTT-GCT-GTTCCGGGCCTCCTGGACGGG 640941
Query 80796 GTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATG 80855
||| ||| ||| |||| | |||||||||||| ||| ||| | || || || ||
Sbjct 640940 GTAGTGGTTGACATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTG 640881
Query 80856 AAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGA 80909
|| ||||| |||||| | | ||| | || || || || || ||| ||
Sbjct 640880 GAGCTTCTGGAAGTCGTAGCGTCCCTCGTTGTAGTCTACGAAGGCAGGCAGAGCCAGAGA 640821
Query 80910 CGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAA 80969
|||| ||||| || || ||||| |||| | | ||||||| ||||||||||| |
Sbjct 640820 GGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAG 640761
Query 80970 ATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029
|| || ||||| |||| ||| |||||||| ||| |||||| || |||||
Sbjct 640760 GTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTT 640701
Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089
|||| |||| | || |||| ||||| ||| | || ||||||| || ||| | ||
Sbjct 640700 GTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTT 640641
Query 81090 GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTC 81149
| || | | || ||||| || | ||||||| | || | ||
Sbjct 640640 CTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTC 640581
Query 81150 GAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCC 81208
|||| | |||| | || |||| ||| | ||||| ||||| ||||||||||| ||
Sbjct 640580 AAACTCCTCGCCGTAGCAG-TCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCC 640522
Query 81209 AGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACA 81268
| || || ||||| || |||||||||| || || ||||| || || ||| |
Sbjct 640521 AATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATA 640462
Query 81269 GGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATG 81327
|| || ||| || | || || | || || || ||||| || || || || |
Sbjct 640461 AATCACGAGCA-CGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAAC 640403
Query 81328 ATGTCCGCATGCCATGGCTCCAGATACACGGC--GATCGAC----CCCTTGCGACGGCCA 81381
| || || ||||| ||||||| || | ||| | || | | |||| ||||
Sbjct 640402 ACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTG---TTGCCA 640346
Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441
||||||| ||| || | ||| || ||| || ||||| | ||| || |||| |||||
Sbjct 640345 CCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTG 640286
Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAA 81499
||| ||||| || || | || || || ||||||| | | || ||| ||
Sbjct 640285 GACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAA- 640227
Query 81500 GACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTC 81559
||||| ||||| | | ||| || ||| || || || | || ||||| || |
Sbjct 640226 -GCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGC 640168
Query 81560 CCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGA-AACAGCTTGACATCTGAGG 81611
|||||||||| || | |||||||| |||||||| ||||| |||||| |||||
Sbjct 640167 CCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGC-TGACAT-TGAGG 640110
Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671
|| ||| || ||||| ||||| || | ||||| |||| | | |||||
Sbjct 640109 ------TGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACAT 640056
Query 81672 CAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACG 81731
|| | ||||||||| ||| || ||||| ||| || || |||| ||| |||||
Sbjct 640055 GAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACG 639996
Query 81732 CATAAACATGTACTGGGG 81749
||||| ||||| ||||||
Sbjct 639995 CATAATCATGTGCTGGGG 639978
>seq36
Length=230664
Score = 212 bits (234), Expect = 7e-50
Identities = 183/227 (81%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || ||||| || |||||||||||||| || ||||||||||| |||||| |
Sbjct 21788 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 21729
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || |||||||||||||||||||||||||| |||||
Sbjct 21728 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 21669
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||||||||| ||||| || ||||| | || ||||| |||||||| ||
Sbjct 21668 CAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 21609
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||| ||||| ||||| || | || || || |||||
Sbjct 21608 ATCCAGAAGGAATCAACTCTCCATCTTGTGCTCCGCCTCCGTGGTGG 21562
Score = 143 bits (158), Expect = 3e-29
Identities = 162/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475
|||||||||| | ||||| ||||| ||||| || ||||| || || ||||| || |
Sbjct 21488 TTGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCG 21429
Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535
||| | || | || ||||| |||||||| || |||||||| |||||||||||||| |
Sbjct 21428 ACAATGTCAAATCAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGA 21369
Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595
|||| ||||| || || | || || | ||||| || || || ||||| |||| ||||
Sbjct 21368 TTTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGG 21309
Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| |||||||| || | || || || || ||
Sbjct 21308 AGTCCACACTTCATCTTGTTCTCCGCCTCCGTGGCGG 21272
Score = 140 bits (154), Expect = 4e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || || ||||| || || |||||||| || || |
Sbjct 21270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 21211
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| | || ||||| ||||| || || |||||||| ||||||
Sbjct 21210 GACACAATAGACAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCAG 21151
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || || || || ||||||| || || || |||||||| ||
Sbjct 21150 CAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAAC 21091
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| || ||||| || || | || | || |||||| | || ||||| ||
Sbjct 21090 ATTCAGAAGGAGTCAACCTTGCACTTGGTGTTGCGTTTGCGTGGTGGCCA 21041
>seq6
Length=626929
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || || ||||| |||||
Sbjct 11574 ATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 11515
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | ||||| |||||||||||||| || || |||||||||
Sbjct 11514 GACACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 11455
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || |||||||| ||||| |||||||||| || ||||| || ||||| ||
Sbjct 11454 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAAC 11395
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||| || || | || |||| || || |||||
Sbjct 11394 ATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGG 11348
>seq5
Length=634825
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| |||||||| | || || ||||| || || || ||||| ||||| ||| | ||
Sbjct 42533 TTCGTCAAGACCTTGACGGGTAAGACCATCACCCTAGAGGTCGAGTCCTCTGACACAATC 42474
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | || | || || ||||| |||||||| ||||| || ||||||||||| |
Sbjct 42473 GACAATGTCAAATCCAAGATACAGGATAAGGAGGGTATTCCCCCTGACCAGCAGCGATTG 42414
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| |||||||| ||||| || ||||||| || ||||| |||||||| ||| |||| |||
Sbjct 42413 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTGGCAGACTACAATATCCAGAAG 42354
Query 27595 G 27595
|
Sbjct 42353 G 42353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570290916770960
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