Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq36 96.9 2e-15
seq6 93.3 3e-14
>seq36
Length=230664
Score = 96.9 bits (106), Expect = 2e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550
|||||||||||| || | || |||||| |||||||| || |||| |||||| || |
Sbjct 21055 ACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCC 21114
Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610
|| ||||| ||||| ||||| || || | |||||| ||||| || || | || || ||
Sbjct 21115 ATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTT 21174
Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669
|||| ||| |||| || ||| | |||||||| ||||| || | ||| |
Sbjct 21175 GTCT-TGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGA 21233
Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || | || || || || ||||||||
Sbjct 21234 TGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||| | ||||||||| ||||| || ||||| || |||| || || ||
Sbjct 21571 AGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGG 21630
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || || || ||||| || | |||||||||||| || || | |||||||
Sbjct 21631 CCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCC 21690
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || || | || ||||| ||| || || | ||
Sbjct 21691 TTGTC-CTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGT 21749
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || ||||| | ||||| || ||||||||||||
Sbjct 21750 GATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCATG 21789
>seq6
Length=626929
Score = 93.3 bits (102), Expect = 3e-14
Identities = 156/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||||| || || ||||||||||| || ||||| || || | || || ||
Sbjct 11357 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 11416
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || || ||||| || | ||||| ||||| || || | ||||||
Sbjct 11417 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCC 11476
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| ||| | || ||| | || ||||| |||||| || | |||
Sbjct 11477 TTGTCCTGGAT-TTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGT 11535
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||||| || || || | || || || ||||||||||| |||
Sbjct 11536 GATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTTG 11578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314719116848789
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |