Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq36 96.9 2e-15 seq6 93.3 3e-14 >seq36 Length=230664 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 |||||||||||| || | || |||||| |||||||| || |||| |||||| || | Sbjct 21055 ACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCC 21114 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || ||||| ||||| ||||| || || | |||||| ||||| || || | || || || Sbjct 21115 ATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTT 21174 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 |||| ||| |||| || ||| | |||||||| ||||| || | ||| | Sbjct 21175 GTCT-TGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGA 21233 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || | || || || || |||||||| Sbjct 21234 TGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | ||||||||| ||||| || ||||| || |||| || || || Sbjct 21571 AGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGG 21630 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || ||||| || | |||||||||||| || || | ||||||| Sbjct 21631 CCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCC 21690 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || || | || ||||| ||| || || | || Sbjct 21691 TTGTC-CTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGT 21749 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | ||||| || |||||||||||| Sbjct 21750 GATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCATG 21789 >seq6 Length=626929 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||||| || || ||||||||||| || ||||| || || | || || || Sbjct 11357 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 11416 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||||| ||||| || || | |||||| Sbjct 11417 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCC 11476 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | || ||||| |||||| || | ||| Sbjct 11477 TTGTCCTGGAT-TTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGT 11535 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || || || | || || || ||||||||||| ||| Sbjct 11536 GATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTTG 11578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719116848789