Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq112 98.7 9e-16 >seq112 Length=75797 Score = 98.7 bits (108), Expect = 9e-16 Identities = 109/141 (77%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 34646 TATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTG 34705 || |||||||| | |||||||| || || ||||| ||||||||||| || ||||| || Sbjct 40895 TACCAACGATCCTGCGACATGGGATTGGGCGTGCCCTTCAACATTGCGAGCTACGCGCTC 40954 Query 34706 CTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGGTGCATACGT- 34763 ||||| |||||||||| |||| |||| | ||||| || || | || | || |||| Sbjct 40955 CTCACCCACATGATCGCACATG-CGTGCGACTTGGTCCCCGGCAACCT--TACACACGTC 41011 Query 34764 -TGGGGGATGCGCATATCTAC 34783 |||| ||||||||| ||||| Sbjct 41012 ATGGGCGATGCGCATGTCTAC 41032 Score = 98.7 bits (108), Expect = 9e-16 Identities = 109/141 (77%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 6562 GTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCC-CACGAC 6618 ||||| ||||||||| |||| |||| || | || | || || ||||| | |||| | Sbjct 41032 GTAGACATGCGCATCGCCCATGACGTGTGTA--AGGTTGCCGGGGACCAAGTCGCACG-C 40976 Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 ||| |||||||||| ||||| || ||||| || ||||||||||| ||||| || || || Sbjct 40975 ATGTGCGATCATGTGGGTGAGGAGCGCGTAGCTCGCAATGTTGAAGGGCACGCCCAATCC 40916 Query 6679 CATGTCTCCCGATCGTTGATA 6699 |||||| | |||||||| || Sbjct 40915 CATGTCGCAGGATCGTTGGTA 40895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247086235760