Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq36 176 1e-38
seq6 154 3e-32
seq5 125 2e-23
seq4 84.2 5e-11
>seq36
Length=230664
Score = 176 bits (194), Expect = 1e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| ||||| |||||||| || |||||||||||||| || || || | || |||
Sbjct 21287 AGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCT 21346
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||| ||||| ||||| || || || || ||||||||||||| |||||||||||
Sbjct 21347 TCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 21406
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| |||||| ||| || || ||||| || ||||| ||| |||||||| || || |||
Sbjct 21407 TGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTC 21466
Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104
||||| || | |||||| ||||
Sbjct 21467 TTTCCGGTCAAAGTCTTGACAA 21488
Score = 167 bits (184), Expect = 5e-36
Identities = 155/197 (79%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
|| ||||| || || ||||| || || ||||| |||| |||||| || ||||| || ||
Sbjct 21074 GTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCG 21133
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037
||||||||||| || || ||||| ||||||| ||||| ||||| || |||||| |||
Sbjct 21134 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTC 21193
Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097
||||| || || |||||||| ||| ||||| || ||||| |||||||| ||||| |||
Sbjct 21194 ACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTC 21253
Query 211098 TTTACAAACACCTGCAT 211114
|| || || | ||||||
Sbjct 21254 TTGACGAAGATCTGCAT 21270
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || ||||| || || || |||||||| || || || ||||| | || ||
Sbjct 21577 AGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 21636
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || || || || || |||||||||||||||| ||| |||||||||
Sbjct 21637 TCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC 21696
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || |||||||||||||| || ||||| |||||||| |||
Sbjct 21697 TGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 21756
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || || || || || | ||||||
Sbjct 21757 TTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
>seq6
Length=626929
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || ||| ||| || |||||||| || || || ||||| | |||||
Sbjct 11363 AGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 11422
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || ||||| || || | || |||||||||
Sbjct 11423 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 11482
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || ||||| ||||||||||| || || |||||||| |||||||||
Sbjct 11483 TGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 11542
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| ||||| || || | |||||| ||
Sbjct 11543 TTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 11577
>seq5
Length=634825
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| ||||| || || || || ||||| | ||||| || ||||||||||| || |||||
Sbjct 42355 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 42414
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || |||||||| |||| || ||||| ||||| ||||| ||| || || |||
Sbjct 42415 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 42474
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||||||| || ||||| || ||||| ||||| ||||| | ||||| || ||
Sbjct 42475 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 42533
>seq4
Length=676188
Score = 84.2 bits (92), Expect = 5e-11
Identities = 174/259 (67%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145
|||| |||||||| ||||||||||| ||| |||||| ||||| ||||| ||
Sbjct 640743 TTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAGGAT 640684
Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205
| ||| ||| | || ||| | || ||| | ||| |||| |||||| || | |||
Sbjct 640683 TACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTGGGCACGAATGGTCG 640624
Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265
| || || ||| ||| ||||||| ||||| |||| || ||| || |||
Sbjct 640623 CACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAGC 640564
Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325
||| | || ||||| || |||||||| | ||| |||| | ||||| | || |
Sbjct 640563 AGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGA 640504
Query 178326 CTCGTTTCATGAAGAGGTC 178344
| || |||||||| || ||
Sbjct 640503 CGCGCTTCATGAAAAGATC 640485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159111410481545
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |