Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq103 122 7e-23
>seq103
Length=87482
Score = 122 bits (134), Expect = 7e-23
Identities = 198/283 (70%), Gaps = 4/283 (1%)
Strand=Plus/Minus
Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872
||||| | || ||||| |||| || || |||| || || ||||| || || |
Sbjct 34959 CTTGA-TGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGA 34901
Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932
|||| |||||||||||||| | ||| || | ||||| |||||| | || | || |
Sbjct 34900 TCTGGAATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAA 34841
Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992
| ||||| ||||| || || |||||| ||| ||||| || |||| || || || || |
Sbjct 34840 CCAAGTTCTCGTTGACAATGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGA 34781
Query 4993 AGTA---CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049
| || || |||||| | | | || ||||||| | |||||||||| | | ||| |
Sbjct 34780 AATATTTCTCATCGTCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGA 34721
Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092
||||| | ||||| || || || || || |||||||||||
Sbjct 34720 TCTCTTCGGCCGTCCAGAAAGAAGCCTCGGCCTTTTTGTACAT 34678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427035375645089
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |