Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq103 122 7e-23 >seq103 Length=87482 Score = 122 bits (134), Expect = 7e-23 Identities = 198/283 (70%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872 ||||| | || ||||| |||| || || |||| || || ||||| || || | Sbjct 34959 CTTGA-TGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGA 34901 Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932 |||| |||||||||||||| | ||| || | ||||| |||||| | || | || | Sbjct 34900 TCTGGAATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAA 34841 Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992 | ||||| ||||| || || |||||| ||| ||||| || |||| || || || || | Sbjct 34840 CCAAGTTCTCGTTGACAATGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGA 34781 Query 4993 AGTA---CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || || |||||| | | | || ||||||| | |||||||||| | | ||| | Sbjct 34780 AATATTTCTCATCGTCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGA 34721 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||||| | ||||| || || || || || ||||||||||| Sbjct 34720 TCTCTTCGGCCGTCCAGAAAGAAGCCTCGGCCTTTTTGTACAT 34678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427035375645089