Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq112 113 3e-20 >seq112 Length=75797 Score = 113 bits (124), Expect = 3e-20 Identities = 207/301 (69%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 |||||| ||||| | | |||| || ||||| || |||||||| | ||| || Sbjct 40786 TACGTAGAACTGGGCGAAGACGTGACAGGGAGGCAGGGCCATGAGATGTAGATCTCGGGC 40727 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC---CAC 27443 |||||| |||| || |||||||||||||| | || |||||| |||| ||| ||| Sbjct 40726 GTTCCAAGCGCTCATAATGATGCGCCTGTCGTACGGCTTGTTCTTGATTTTGTCTATCAC 40667 Query 27444 GGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACT 27502 | || || ||||| || || ||| | || | |||||| | | ||| || | Sbjct 40666 GTCG----GCGAGCTGGTCGACTCCCTTGCCGGCGTAGTCGGTCTTGGCGTCGACATATT 40611 Query 27503 CTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 27562 |||| || || || | ||||||||| |||||||| || |||||||| || | || | || Sbjct 40610 CTGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGACCCAGGTCGCCTACCTCGCGGT 40551 Query 27563 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 27622 || || |||| |||| | || || | || |||||| | ||||| ||||| || | Sbjct 40550 GCGTGAGGCCCAGGCTGTCGAGGAACTCGCGCGATCCGTTGCCATCCCATATCTTGACGC 40491 Query 27623 C 27623 | Sbjct 40490 C 40490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369494892292523