Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq103 150 2e-31 >seq103 Length=87482 Score = 150 bits (166), Expect = 2e-31 Identities = 336/502 (67%), Gaps = 7/502 (1%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || || || |||||||| ||||||||||| || || || ||||| ||||||| || || Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| || ||||| |||||| | | || || | || | | || | | || | Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 || | ||| || || || || || || |||||||| | |||||| || | || Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 | ||| | |||||| || |||||||||| ||||| ||||||||||| || ||| Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334 Query 48090 GATGTT--ACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147 |||| | | | | || || | | | | | ||| || || || || |||| Sbjct 35333 --TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTGCAGCAAGCAGGCAA 35276 Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 | || || ||||| ||||| | ||||||||||| || || ||||||||||||| Sbjct 35275 AGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGGCA 35216 Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTT 48267 | | ||||| || || ||||| || || | || |||| || ||||| || |||| Sbjct 35215 TCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACCTT 35156 Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTATCCACC 48324 | ||||| ||||| || | | || || | |||| ||| ||| || ||||| | Sbjct 35155 CCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTGGATTCTTTGTCCTGAATCCAAC 35096 Query 48325 GTTGTGCCCAATCAGCCTTCTT 48346 | |||||||| |||||||| Sbjct 35095 GGATAGCCCAATCTGCCTTCTT 35074 Score = 113 bits (124), Expect = 6e-20 Identities = 227/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCAT--TGCTATCTTTAACGTAAGTATCTA 48420 || || |||||||| ||||| |||| || | |||| | || | ||| || || | Sbjct 35000 GTCTCGATAGCATTGAAGAGGTAGTTGCGTTGAGCATGCT--CCTTGATGTAGGTGTCGA 34943 Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480 |||| ||| || |||| ||||| ||||| || || ||||| ||||||||||| | Sbjct 34942 TTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGGAATCCGTAAAAGC 34883 Query 48481 ATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTA 48540 | | || || | || || || || | || || ||| |||| ||||| || || | Sbjct 34882 AACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAGTTCTCGTTGACAA 34823 Query 48541 TTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG 48600 | || ||| |||||||| ||||| | | || || |||||||| || | | | Sbjct 34822 TGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATATTTCTCATCGTCAT 34763 Query 48601 TCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 48657 ||| | || |||||||| | | |||||| || | ||| | ||||| || ||||| | Sbjct 34762 TCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCTTCGGCCGTCCAGA 34703 Query 48658 ATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | || ||||| || ||||| ||||| | ||| || Sbjct 34702 AAGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 34669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694645068377120