Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq103 150 2e-31
>seq103
Length=87482
Score = 150 bits (166), Expect = 2e-31
Identities = 336/502 (67%), Gaps = 7/502 (1%)
Strand=Plus/Minus
Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909
|| || || |||||||| ||||||||||| || || || ||||| ||||||| || ||
Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514
Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969
||||| || ||||| |||||| | | || || | || | | || | | || |
Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454
Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029
|| | ||| || || || || || || |||||||| | |||||| || | ||
Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394
Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089
| ||| | |||||| || |||||||||| ||||| ||||||||||| || |||
Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334
Query 48090 GATGTT--ACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147
|||| | | | | || || | | | | | ||| || || || || ||||
Sbjct 35333 --TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTGCAGCAAGCAGGCAA 35276
Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207
| || || ||||| ||||| | ||||||||||| || || |||||||||||||
Sbjct 35275 AGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGGCA 35216
Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTT 48267
| | ||||| || || ||||| || || | || |||| || ||||| || ||||
Sbjct 35215 TCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACCTT 35156
Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTATCCACC 48324
| ||||| ||||| || | | || || | |||| ||| ||| || ||||| |
Sbjct 35155 CCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTGGATTCTTTGTCCTGAATCCAAC 35096
Query 48325 GTTGTGCCCAATCAGCCTTCTT 48346
| |||||||| ||||||||
Sbjct 35095 GGATAGCCCAATCTGCCTTCTT 35074
Score = 113 bits (124), Expect = 6e-20
Identities = 227/334 (68%), Gaps = 7/334 (2%)
Strand=Plus/Minus
Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCAT--TGCTATCTTTAACGTAAGTATCTA 48420
|| || |||||||| ||||| |||| || | |||| | || | ||| || || |
Sbjct 35000 GTCTCGATAGCATTGAAGAGGTAGTTGCGTTGAGCATGCT--CCTTGATGTAGGTGTCGA 34943
Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480
|||| ||| || |||| ||||| ||||| || || ||||| ||||||||||| |
Sbjct 34942 TTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGGAATCCGTAAAAGC 34883
Query 48481 ATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTA 48540
| | || || | || || || || | || || ||| |||| ||||| || || |
Sbjct 34882 AACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAGTTCTCGTTGACAA 34823
Query 48541 TTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG 48600
| || ||| |||||||| ||||| | | || || |||||||| || | | |
Sbjct 34822 TGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATATTTCTCATCGTCAT 34763
Query 48601 TCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 48657
||| | || |||||||| | | |||||| || | ||| | ||||| || ||||| |
Sbjct 34762 TCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCTTCGGCCGTCCAGA 34703
Query 48658 ATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
| || ||||| || ||||| ||||| | ||| ||
Sbjct 34702 AAGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 34669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694645068377120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |