Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 174 2e-38 seq103 132 7e-26 >seq4 Length=676188 Score = 174 bits (192), Expect = 2e-38 Identities = 449/682 (66%), Gaps = 4/682 (1%) Strand=Plus/Minus Query 76541 TCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACC 76600 ||| ||| || || ||||| || || ||||||| | ||| ||||| | | || || Sbjct 640561 TCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACG 640502 Query 76601 CGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT 76660 || ||||| || ||||| || ||||| ||||||| |||| ||| || | | |||| Sbjct 640501 CGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCT 640442 Query 76661 TCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCT 76720 || || || ||||||| | ||| |||||||| | | ||| | ||||| || || Sbjct 640441 TCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCC 640382 Query 76721 AGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTG 76780 | || || || | | | || ||||| || || || ||||| || | ||||||||| ||| Sbjct 640381 AAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTG 640322 Query 76781 TTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATA 76840 || || |||| | | ||| ||||| | || || || || || || || || | ||| Sbjct 640321 TTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATG 640262 Query 76841 TAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAG 76900 || ||| || ||||| | | | ||| || || || ||||| || ||| Sbjct 640261 TAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCACCAGCCATCTTGGAG 640202 Query 76901 ATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTA 76960 || | || ||| || | ||||||||||||||||| || || || ||| |||||| Sbjct 640201 ATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCG 640142 Query 76961 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGAT 77020 | || || || |||| ||| ||| || || || || || | ||| || || Sbjct 640141 ACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAG 640082 Query 77021 GCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCC 77080 || || ||||| ||| || | |||| ||| ||||| | ||| || |||| Sbjct 640081 GCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTG 640022 Query 77081 CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTA 77140 | || || |||||||||||||| | ||| ||||| ||||| || ||| |||| Sbjct 640021 TCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTG 639962 Query 77141 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TG 77198 || | || | | ||||| |||||||| || || ||||| || | || || Sbjct 639961 CCGTTGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTG 639902 Query 77199 AAAAGTCTCTTTCGTAAATAAT 77220 ||| ||||| || || | ||| Sbjct 639901 AAA--TCTCTGTCATAGACAAT 639882 >seq103 Length=87482 Score = 132 bits (146), Expect = 7e-26 Identities = 332/502 (66%), Gaps = 7/502 (1%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| ||||| || ||||||||||| || || || ||||| ||||||| || || Sbjct 35573 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 35514 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| || ||||| ||||||| || || | || | | || | | || | Sbjct 35513 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 35454 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | ||| || || || || || ||| |||||||| | |||||| || | || Sbjct 35453 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 35394 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || | |||||| || |||||||||| || || ||||||||||| | || ||| Sbjct 35393 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 35334 Query 46579 GATGTT--ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636 |||| | | | || || | | | ||| |||| || || || || |||| Sbjct 35333 --TGTTGGATCATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTGCAGCAAGCAGGCAA 35276 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 | || || || || ||||| | ||||||||||| || || ||||| || |||| Sbjct 35275 AGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGGCA 35216 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTT 46756 | | |||||||| || ||||| || |||| || |||| || ||||| || |||| Sbjct 35215 TCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACCTT 35156 Query 46757 CTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCACC 46813 | || || || || || || | | || || | |||| || || |||||||| | Sbjct 35155 CCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTGGATTCTTTGTCCTGAATCCAAC 35096 Query 46814 TTTGAGCCCAATCAGCCTTTTT 46835 ||||||||| ||||| || Sbjct 35095 GGATAGCCCAATCTGCCTTCTT 35074 Score = 120 bits (132), Expect = 4e-22 Identities = 226/332 (68%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 || || |||||||| ||||| |||| || | || || || | || || || ||| Sbjct 35000 GTCTCGATAGCATTGAAGAGGTAGTTGCGTTGAGCATGCTCCTTGATGTAGGTGTCGATT 34941 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 || ||| || |||| || || || || || || ||||| ||||||||||| || Sbjct 34940 AAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGGAATCCGTAAAAGCAA 34881 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | || |||| | || || || | || || ||| ||| ||||| || || || Sbjct 34880 CGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAGTTCTCGTTGACAATG 34821 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 || ||| |||||||| ||||||| | || || |||||||| |||||| | || Sbjct 34820 CCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATATTTCTCATCGTCATTC 34761 Query 47092 A---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 | | || |||||||| | | |||||| || | ||| | ||||| || |||||||| Sbjct 34760 AGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCTTCGGCCGTCCAGAAA 34701 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || ||||| || ||||| ||||| | ||| || Sbjct 34700 GAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 34669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712910044378560