Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq36 116 9e-21
seq6 96.9 8e-15
>seq36
Length=230664
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967
|| ||||| || || |||||||| || || | || | ||||| || || |||||||
Sbjct 21074 GTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCG 21133
Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027
||||||||||| | ||||||||| | | || ||||| || |||||||| ||| ||
Sbjct 21134 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTC 21193
Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087
|| | |||| |||| ||| || || ||||| || || || || || ||||| |||
Sbjct 21194 ACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTC 21253
Query 152088 TTCACGAAGACCTGCAT 152104
|| ||||||| ||||||
Sbjct 21254 TTGACGAAGATCTGCAT 21270
Score = 113 bits (124), Expect = 1e-19
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| ||||||||||| || ||||| || |||||||| |||||||| | || |
Sbjct 21280 GAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACG 21339
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| ||||| | ||| || ||||| || || | ||||||||| | | || |||||
Sbjct 21340 GCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTC 21399
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| |||||||| ||| ||||||| | || | | || ||| || || || || ||
Sbjct 21400 CTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGT 21459
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCAC 152092
||| || || || || | |||||| ||
Sbjct 21460 AATGGTCTTTCCGGTCAAAGTCTTGAC 21486
Score = 105 bits (116), Expect = 2e-17
Identities = 157/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| |||||||| ||||| || || || ||||||||||| || || | || |
Sbjct 21570 GAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCG 21629
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| || || || ||||| || || || || || | ||| ||||| | | |||||
Sbjct 21630 GCCGTCCTCAAGCTGCTTT--CCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCC 21687
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || ||||| || |||||| | || | | |||| || ||| || ||||||
Sbjct 21688 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGA 21747
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || || || || ||||| | ||||||
Sbjct 21748 GTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
>seq6
Length=626929
Score = 96.9 bits (106), Expect = 8e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972
||| || ||||||||||| ||||| | || | ||||| || || || || || ||
Sbjct 11383 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 11442
Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032
||| || | ||||||||| | | ||| || ||||| || || ||||| ||||| |
Sbjct 11443 GATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTT 11502
Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092
|| | | |||| ||| ||| || || || || || || || || ||||| ||||| ||
Sbjct 11503 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGAC 11562
Query 152093 GAAGACCTGCATTTTACC 152110
||| | |||||| || ||
Sbjct 11563 GAAAATCTGCATCTTGCC 11580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153780397161843
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |