Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq6 183 6e-41
seq36 170 4e-37
seq5 156 9e-33
>seq6
Length=626929
Score = 183 bits (202), Expect = 6e-41
Identities = 179/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || |||| || | ||||| || || |||||||||||||| ||
Sbjct 11347 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGC 11406
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || |||||||| | || || ||||| ||
Sbjct 11407 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGG 11466
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| ||||| || | || ||| | ||||| ||||| |||| || ||
Sbjct 11467 GATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 11526
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||||| ||||||||||| || || | ||||| ||||| |||||||| ||
Sbjct 11527 CTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 11577
>seq36
Length=230664
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| ||||| || || ||||| | || ||| || |||||||||||||| ||
Sbjct 21562 CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCG 21621
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| || || || || ||||| |||| ||| ||||||||| |||
Sbjct 21622 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGA 21681
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| | || || | ||||| ||||| || | |||||
Sbjct 21682 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACC 21741
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || || | || || ||||| ||||||||
Sbjct 21742 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 21788
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||| || | |||| || || || || || || ||||||||||| |||
Sbjct 21044 CCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCA 21103
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || |||||||| || ||||||||||| ||||| | ||| || ||||| |||
Sbjct 21104 AGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 21163
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || |||||||| ||||||| || ||| | || || ||||| |||| ||| ||
Sbjct 21164 ATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACC 21223
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 21224 TCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
Score = 156 bits (172), Expect = 9e-33
Identities = 164/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| ||||| || || ||||| | ||| || || |||||||| || || ||
Sbjct 21271 ACCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGC 21330
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||| ||||| || || | ||||| || || || |||| ||| || |||||| ||
Sbjct 21331 GAGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGG 21390
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||||||||| ||||||| ||| || | |||||||| || |||| ||| ||
Sbjct 21391 AATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCAC 21450
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
||||| || || ||||| || ||||||||||| ||
Sbjct 21451 CTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 21486
>seq5
Length=634825
Score = 156 bits (172), Expect = 9e-33
Identities = 142/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| ||||| |||||||| || || || ||||||||||| || || || || |||||||||
Sbjct 42355 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 42414
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || |||||| |||||||||||||| || || ||||| | ||| || | |||
Sbjct 42415 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 42474
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| || | ||||| || || ||||| |||||||||||||| ||||| |||||
Sbjct 42475 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 42533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046702546791382
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |