Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq36 181 3e-40 seq6 159 8e-34 >seq36 Length=230664 Score = 181 bits (200), Expect = 3e-40 Identities = 164/205 (80%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||||||||| || |||||||| ||||||||| || ||| Sbjct 21267 CAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCTGAC 21208 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||||||| ||||||||||| || ||||| |||||||| Sbjct 21207 ACAATAGACAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCAGCAG 21148 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| |||||||| || |||||| |||| ||||| || || ||| | Sbjct 21147 CGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAACATT 21088 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| |||| |||| Sbjct 21087 CAGAAGGAGTCAACCTTGCA-CTTG 21064 Score = 163 bits (180), Expect = 7e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||| | || ||||| || || ||||||||||||||| || || || ||||| Sbjct 21486 GTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGAC 21427 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || |||||| ||||||||| ||||| ||||| || ||||| |||||||| || || || Sbjct 21426 AATGTCAAATCAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATT 21367 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || |||||| | ||||| || | || || |||||||||||| |||| || || Sbjct 21366 TTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGAG 21307 Query 178113 TCAACACTGCATCTTGTT 178130 || ||||| ||||||||| Sbjct 21306 TCCACACTTCATCTTGTT 21289 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || || || || || ||||| || ||||| || || ||| Sbjct 21785 CAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCTGAC 21726 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 21725 ACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAACAG 21666 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || ||||| ||||| || || || | || || || || || ||| || Sbjct 21665 CGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAACATC 21606 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || |||||||| || |||||||| Sbjct 21605 CAGAAGGAATCAACTCTCCATCTTGT 21580 >seq6 Length=626929 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || |||||||| || |||||||||||||||||||| || ||| Sbjct 11571 CAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCTTCCGAC 11512 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || || |||||||| || || ||||| || |||||||| Sbjct 11511 ACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 11452 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| ||||| | || || ||||| || ||| || Sbjct 11451 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAACATC 11392 Query 178104 CAAAAAGA 178111 || || || Sbjct 11391 CAGAAGGA 11384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203689049471202