Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq36 181 3e-40
seq6 159 8e-34
>seq36
Length=230664
Score = 181 bits (200), Expect = 3e-40
Identities = 164/205 (80%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||||||||| || |||||||| ||||||||| || |||
Sbjct 21267 CAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCTGAC 21208
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||||||| ||||||||||| || ||||| ||||||||
Sbjct 21207 ACAATAGACAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCAGCAG 21148
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||||||||| |||||||| || |||||| |||| ||||| || || ||| |
Sbjct 21147 CGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAACATT 21088
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || ||||| |||| ||||
Sbjct 21087 CAGAAGGAGTCAACCTTGCA-CTTG 21064
Score = 163 bits (180), Expect = 7e-35
Identities = 155/198 (78%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || ||| | || ||||| || || ||||||||||||||| || || || |||||
Sbjct 21486 GTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGAC 21427
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| |||||| ||||||||| ||||| ||||| || ||||| |||||||| || || ||
Sbjct 21426 AATGTCAAATCAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATT 21367
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
||||| || |||||| | ||||| || | || || |||||||||||| |||| || ||
Sbjct 21366 TTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGAG 21307
Query 178113 TCAACACTGCATCTTGTT 178130
|| ||||| |||||||||
Sbjct 21306 TCCACACTTCATCTTGTT 21289
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| ||||| || || || || || ||||| || ||||| || || |||
Sbjct 21785 CAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCTGAC 21726
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| |||||||||||||| || ||||| ||||| ||||| ||
Sbjct 21725 ACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAACAG 21666
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || ||||| ||||| || || || | || || || || || ||| ||
Sbjct 21665 CGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAACATC 21606
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || |||||||| || ||||||||
Sbjct 21605 CAGAAGGAATCAACTCTCCATCTTGT 21580
>seq6
Length=626929
Score = 159 bits (176), Expect = 8e-34
Identities = 148/188 (79%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || |||||||| || |||||||||||||||||||| || |||
Sbjct 11571 CAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCTTCCGAC 11512
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| || || |||||||| || || ||||| || ||||||||
Sbjct 11511 ACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 11452
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || || |||||||| ||||| | || || ||||| || ||| ||
Sbjct 11451 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAACATC 11392
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 11391 CAGAAGGA 11384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203689049471202
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |