Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15] 2,733 sequences; 29,314,310 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 163 3e-35 seq36 122 8e-23 seq5 84.2 2e-11 >seq6 Length=626929 Score = 163 bits (180), Expect = 3e-35 Identities = 178/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||||| ||||| |||||||||||||| ||||| |||||| Sbjct 11345 CCACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 11404 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | |||||||| | || |||||||||||||| || || || || ||||| ||||| | | Sbjct 11405 GCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGG 11464 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 || | || |||||||||| |||||| ||| ||| | | | |||||| ||||| Sbjct 11465 GGGATGCCCTCCTTGTCCTGGATTTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTC 11523 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| | || ||||| || || || || ||||| |||||||||||||| || Sbjct 11524 CACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 11577 >seq36 Length=230664 Score = 122 bits (134), Expect = 8e-23 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| ||||| || || |||||||| ||||| ||||| | Sbjct 21561 GCCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGC 21620 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || |||||||| || || || ||||| ||||||||||| | || Sbjct 21621 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGG 21680 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTC 41811 || | |||||||||| ||| | || | ||| || | || | ||||| ||||| Sbjct 21681 AATTCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATGGTGTCAGATGACTC 21737 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || || || || ||||||||||||||| Sbjct 21738 GACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCATG 21789 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || | ||| ||||||| |||| || ||||||||||||||| ||||| | Sbjct 21043 GCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGC 21102 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || ||||| || |||||||| || || ||||| ||||| | || Sbjct 21103 AAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 21162 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || || || |||| | ||| | |||| |||| ||| | | | ||||| || ||| Sbjct 21163 AATGCCTTCTTTGT-CTTGAATCTTTGACTTC-ACGTTGTCTATTGTGTCAGAAGATTCC 21220 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || || || ||||| ||||| |||||||| Sbjct 21221 ACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270 >seq5 Length=634825 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| || || ||||| | ||||| || | || || ||||||||||| || || | Sbjct 42353 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 42412 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| ||||| ||||| | ||||| | |||||| ||| || | || | || || | Sbjct 42413 TCAATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCC-TGTATCTTGGATTTGACATTG 42471 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||| | || || || |||||||||| ||||| ||| Sbjct 42472 TCGATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACG 42531 Query 41852 AAA 41854 ||| Sbjct 42532 AAA 42534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462288206539600