Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008105.1_202015-05-15]
2,733 sequences; 29,314,310 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6 163 3e-35
seq36 122 8e-23
seq5 84.2 2e-11
>seq6
Length=626929
Score = 163 bits (180), Expect = 3e-35
Identities = 178/234 (76%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || || || | ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 11345 CCACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 11404
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
| |||||||| | || |||||||||||||| || || || || ||||| ||||| | |
Sbjct 11405 GCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGG 11464
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811
|| | || |||||||||| |||||| ||| ||| | | | |||||| |||||
Sbjct 11465 GGGATGCCCTCCTTGTCCTGGATTTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTC 11523
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||| | || ||||| || || || || ||||| |||||||||||||| ||
Sbjct 11524 CACCTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 11577
>seq36
Length=230664
Score = 122 bits (134), Expect = 8e-23
Identities = 169/232 (73%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | ||| ||||| || || |||||||| ||||| ||||| |
Sbjct 21561 GCCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGC 21620
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| |||| || |||||||| || || || ||||| ||||||||||| | ||
Sbjct 21621 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGG 21680
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTC 41811
|| | |||||||||| ||| | || | ||| || | || | ||||| |||||
Sbjct 21681 AATTCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATGGTGTCAGATGACTC 21737
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| | || || || || || || || || || |||||||||||||||
Sbjct 21738 GACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCATG 21789
Score = 107 bits (118), Expect = 2e-18
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || | ||| ||||||| |||| || ||||||||||||||| ||||| |
Sbjct 21043 GCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGC 21102
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || | || || ||||| || |||||||| || || ||||| ||||| | ||
Sbjct 21103 AAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 21162
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
|| || || |||| | ||| | |||| |||| ||| | | | ||||| || |||
Sbjct 21163 AATGCCTTCTTTGT-CTTGAATCTTTGACTTC-ACGTTGTCTATTGTGTCAGAAGATTCC 21220
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 21221 ACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 21270
>seq5
Length=634825
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/183 (71%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| || || ||||| | ||||| || | || || ||||||||||| || || |
Sbjct 42353 CCTTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 42412
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
||| ||||| ||||| | ||||| | |||||| ||| || | || | || || |
Sbjct 42413 TCAATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCC-TGTATCTTGGATTTGACATTG 42471
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||| ||||| | || || || |||||||||| ||||| |||
Sbjct 42472 TCGATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACG 42531
Query 41852 AAA 41854
|||
Sbjct 42532 AAA 42534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462288206539600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |