Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureobasidium_20pullulans_20[genbank_20GCA_5F001678115.1_202016-07- 01] 1,352 sequences; 17,598,654 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq283 105 1e-17 seq1343 93.3 8e-14 >seq283 Length=1109 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| || ||||| || | || || || || |||||| || ||| Sbjct 560 ATGCCACCACGAAGTCTTAGCACTAAGTGAAGTGTTGCTTCCTTCTGAATATTGTAGTCT 501 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | ||||| ||||||||||||| ||||||||||| || Sbjct 500 GCCAAAGTCCGGCCATCCTCAAGCTGTTTCCCAGCAAAAATTAGCCTCTGTTGGTCTGGA 441 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || || || || ||| Sbjct 440 GGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAGCTTTCC 381 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || || ||||| | || |||| || ||||||||| Sbjct 380 ACCTCAAGGGTAATAGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCATT 330 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| || || |||||||| || || ||||||||||| || || ||||| ||||| Sbjct 941 TCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATTCCCTCTTTG 882 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| || ||||| || ||||| || || || || | ||| ||| Sbjct 881 TCCTGGATTTTAGCCTTCACATTGTCAATGGTATCGGAGCTCTCCACCTCCAAAGTGATG 822 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || |||| ||||||||||| Sbjct 821 GTCTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 787 >seq1343 Length=2062 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| |||| || || || | ||| | ||| || ||||| || || Sbjct 1245 ATACCTCCACGAAGACGTAGGACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCG 1304 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || | || |||||||| |||||||| ||||| | | ||||||||| || Sbjct 1305 CTCAGAGTGCGACCATCCTCCAATTGCTTACCAGCGAAAATAAGACGCTGTTGGTCTGGC 1364 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || || || || || || || | ||| Sbjct 1365 GGGATACCCTCCTTGTCCTGAATCTTTGACTTGACGTTCTCGATGGTGTCCGAGGCTTCG 1424 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || |||||||||||||| | ||||| | ||| ||||||||| Sbjct 1425 ACCTCAAGGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATCTGCATT 1475 Score = 89.7 bits (98), Expect = 9e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||| ||| ||||| || || || | | |||||||| || || ||||| || | Sbjct 862 CGTCCTCCAGTTGCTTACCGGCGAAGATCAGACGTTGTTGGTCTGGAGGAATTCCCTCCT 921 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || |||||||||| || || ||||| | || || ||||| || | Sbjct 922 TGTCTTGGATCTTCGATTTTACATTATCGATGGTGTCTGAGGCCTCGACCTCTAGGGTGA 981 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||||||||| | ||| || | || || ||||| Sbjct 982 TAGTTTTACCAGTGAGTGTCTTGACAAAGATTTGCAT 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905120703201600