Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basipetospora_20chlamydospora_20[genbank_20GCA_5F001599675.1_202016- 03-01] 17 sequences; 33,489,886 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 seq1 125 2e-23 seq2 102 2e-16 >seq5 Length=3107351 Score = 147 bits (162), Expect = 5e-30 Identities = 175/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || |||||||| | ||| ||||| || | ||||| || || ||||| || || | Sbjct 1009996 CATG-CCGCCGCGGAGACGAAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAAT 1010054 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||||||||| ||||| || | || ||||| |||||||| |||||||| ||| | Sbjct 1010055 CAGAGAGCGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGA---T 1010111 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || || || ||||| || | || ||||| || || | || | Sbjct 1010112 CCGGGGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGG 1010171 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| ||||| || ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 1010172 ATTCGACTTCTAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1010226 Score = 129 bits (142), Expect = 1e-24 Identities = 165/226 (73%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | || ||||| |||| ||| || || ||||| || |||| Sbjct 1010224 CATG-CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGT 1010282 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || |||||||| | ||| || || || |||||||| ||||| || | Sbjct 1010283 CGGACAGGGTCCGGCCGTCTTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAG 1010342 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || ||||||||||| |||| || ||||| || || | ||| || | Sbjct 1010343 GAGGAATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAGGACT 1010402 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 | || ||||| ||||| ||||| ||||| || |||||||||| ||| Sbjct 1010403 CGACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGACTAT 1010448 >seq1 Length=7551078 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | || || || ||||| || ||||||| | Sbjct 7246775 CCACCGCGCAGACGCAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 7246716 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||||||||| ||||| ||| ||| Sbjct 7246715 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGGGGG 7246656 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || |||| || || || || Sbjct 7246655 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCGACC 7246596 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 7246595 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 7246549 >seq2 Length=6127077 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190 || ||| |||| || | ||| |||| ||||| ||| |||||||| || || ||||| Sbjct 687361 GAGGCTCTCCCCTGCGCCATGCTCGGCATGAACGCCACCCTCATGAAGCAGTACATCGAG 687302 Query 269191 TTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAAT 269250 ||||| || || | | || || ||||| | || || || ||||| || | || Sbjct 687301 TTCGTCGCCGACAGGCTGCTCGTCGCCCTCGGCAACGACAAGGTCTACAAGTCCACCAAC 687242 Query 269251 CCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGT 269310 ||||||| ||||||||| || || || | || ||||| ||||||||||| ||||| Sbjct 687241 CCCTTCGACTTTATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGC 687182 Query 269311 GTCAGCGACTATCA 269324 ||| ||||||| || Sbjct 687181 GTCGGCGACTACCA 687168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654143056526