Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basipetospora_20chlamydospora_20[genbank_20GCA_5F001599675.1_202016- 03-01] 17 sequences; 33,489,886 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq4 89.7 4e-13 >seq1 Length=7551078 Score = 123 bits (136), Expect = 2e-23 Identities = 235/341 (69%), Gaps = 10/341 (3%) Strand=Plus/Plus Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCAC 30104 ||||||||| ||| ||||||||||| ||| | || || ||| | || || ||| Sbjct 1537607 GTTCCAGGCCGACATGATGATGCGCCGGTCGTAGGGATTCGTCCGTAGTTTGTGGATCAC 1537666 Query 30105 GGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACT 30163 || ||| |||| |||||||| |||| | |||||| | | | || |||| Sbjct 1537667 CTCG----GCAAGCTGGTCCACCCCTTTCCCGGTGTAGTCCGTCTTTGCATCAACATACT 1537722 Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223 | || || || |||| ||| |||||||| ||||| || || ||||| || | || | || Sbjct 1537723 CGGCACCAAAGTGCCGCCATTGGAACCCATACACGGGGCCTAGGTCGCCGACCTCGCGGT 1537782 Query 30224 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30283 || || ||| |||||||| | || | ||| || ||| | ||||||||||| || | Sbjct 1537783 GCGAGAGGCCAACCTTGTCCAGGTACTCGCGGGACCCATTGCCATCCCAGATCTTGACGC 1537842 Query 30284 CCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCC 30342 | || ||| |||| | ||||| ||| |||||| | |||||| |||| ||| | Sbjct 1537843 CTTTTTCGCTGAGCGCGATGGAGGAGGTGTTGCCCTCT-ATGAACCAGAGCAACTCGGCG 1537901 Query 30343 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 || || || ||| | ||||| | ||| || || ||||| || Sbjct 1537902 ACCACAGCTTTCAAGAAGACTCGCTTCGTGGTTAGGAGTGG 1537942 >seq4 Length=3495652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 52002 GACGGCAAGAAGCTCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGAC 52061 ||||||| |||| |||||| || | | ||||| ||| ||| |||| |||||| Sbjct 457283 GACGGCATGAAGTACGTCAAAGTCCGCGTCAGGACGACCAAAATCCCGCAGATTGGCGAC 457342 Query 52062 AAGTTTGCGTCG-TTCACGGCGCAAAAGGGGACGTGCG--GAGCCGTCCTGACCCAGGAG 52118 ||||| |||||| ||||| ||||||||| ||| || | | ||| | | |||||| Sbjct 457343 AAGTTCGCGTCGCGCCACGG-GCAAAAGGGCACGATCGGCGTGACGTACCG--GCAGGAG 457399 Query 52119 GACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTT 52177 |||||||||||| || | || || | || || ||| |||| || ||||| |||||| | Sbjct 457400 GACATGCCCTTC-ACGCGCGAGGGCATCGTTCCGGACATCATTATTAACCCGCACGCCAT 457458 Query 52178 TCCATCCAGGATGAC 52192 || ||| | ||||| Sbjct 457459 CCCCTCCCGAATGAC 457473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617515339541