Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 >seq4 Length=3241893 Score = 185 bits (204), Expect = 1e-41 Identities = 570/869 (66%), Gaps = 12/869 (1%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||||||||| | ||| ||||| | | |||||| |||| |||| ||| || ||||| Sbjct 827273 CCAGGACATTCGTTCGGGCACATGAGTGTCCACTCGCCGTTCTCCTGCACGCGCTTCATG 827332 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || || || |||||||| | || ||||| || | | | | ||| || || || Sbjct 827333 AACAGGTCCGGAATCCACAACGCGTAAAATAAGTCACGAGCGCGAACTTCTTCTTTGCCA 827392 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| || || ||||| | | || || | ||||| || |||| ||| ||| Sbjct 827393 TGATTCTTCCGGAGGTCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATG 827452 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || || |||||||| || || ||||| | || |||||||| || || || Sbjct 827453 GCAAACGCACCTGGGCGTTTGTTGCCGCCTTGATCAACATACCTAGCGGTATTGTTGTAG 827512 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| || || | ||| || || | ||||| || || || ||| || Sbjct 827513 ACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTTGTTCCACCAATGTAGGCCCCG 827572 Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | |||||||| | ||| ||||| || || ||||| |||| ||||| | | Sbjct 827573 GTAGCACGAATCCGGTGGACATT--CAGACCAATACCGCCTGCGGTTTTGGAGATCATGG 827630 Query 54339 CGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 |||| ||| || | || |||||||||||||| || || || ||| |||| | | || Sbjct 827631 CGCA-CGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGG 827689 Query 54398 AAACAGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 || ||| ||||||||| | ||| || |||||||| || | ||| || |||||||| Sbjct 827690 AAGCAGGAGGACATTTGG-GGCGATGGGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTG 827748 Query 54457 CGTAAACCA-TTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 || || | || || | ||| |||||| ||||| || || || || || Sbjct 827749 TGTGAAGTACTTGCTCGACATGTA-ATTGTATGTCTCAATTGCCTTATCGATGTCTTCGC 827807 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 ||| || || || | |||||||| | |||||| || || | || | || |||| || Sbjct 827808 CATGTATGCCGACGGACACACGCATCAGCATGTGTTGTGGACGCTCGGCAATTTTGTCGT 827867 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 |||| || | ||| || ||| | ||| || ||||| || | | ||| |||| Sbjct 827868 TTATGCGGAGGAGGTATGAGCGTTCAAGAGTCTTGAAACCGAAGAACTGGTAGTTGAAGT 827927 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 54695 | || ||||| | ||| | |||||||| | || | ||| | || | | | | | Sbjct 827928 CGCGATCGTAGACGATAGCGGAGTTGAGATCGTCAGCGTGTTTCATGACGATGT-CGTAG 827986 Query 54696 TAATAC-TTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAA 54754 || ||||||| ||||| || ||||| || || |||||||| || | | Sbjct 827987 ACCGACTTTGAAATCATCGGCTGGCTCTTGCCATTCTTTGGGTTGACATAATTGTAGAGG 828046 Query 54755 TCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATT 54814 || | | || | ||| | ||||| |||| |||||| ||||| || || || || Sbjct 828047 TCTTGTACGACAACCGAGAATTGCTTTTTGGTTTGTTTGTGGAGATTCGAGACAGCGATA 828106 Query 54815 CTAGCGGCTAGAATGGCATAATCCGGATG 54843 | || || || |||||||| || ||||| Sbjct 828107 CGTGCTGCGAGGATGGCATATTCGGGATG 828135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721228924000