Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 181 1e-40 seq3 147 2e-30 seq7 131 2e-25 seq8 104 2e-17 >seq1 Length=5232100 Score = 181 bits (200), Expect = 1e-40 Identities = 212/283 (75%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| |||||||| || || |||||||||| ||| ||| | || || ||| Sbjct 3073933 TGGCAAATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAAGAGATCGATCTCTCC 3073874 Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || ||| ||||||| | | | | || ||| | |||||| ||||| ||| Sbjct 3073873 AAAGACCTTCACGACTGGAACAAGAGGCTCAATGACGATGAGCGCTTCTTCATTTCACAC 3073814 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTT 116814 || || ||||| |||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 3073813 GTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAATCTGGTCGAGCGCTTT 3073754 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 || ||||| || | | |||||||| |||||||| ||||| |||||| ||||| Sbjct 3073753 AGC-GGCGAGGTACAAATACCAGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATGGA 3073695 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||| | |||||||| | ||| ||| | |||||||| ||| Sbjct 3073694 GAACATCCACTCGGAGACGTACTCGCTGTTGATCGACACATAC 3073652 Score = 170 bits (188), Expect = 2e-37 Identities = 314/455 (69%), Gaps = 4/455 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040 |||||||||||||||| || ||||| | | || |||| || |||||| ||| Sbjct 3073534 AGAAGGCCGAGTGGGCAATGAAATGGATATCTGACA-AGAGCTCCACCTTCGCGTCGCGT 3073476 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || ||||| || || |||||||| | ||||| || ||||| |||| || Sbjct 3073475 CTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTTCGCGTCCATCTTC 3073416 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| ||||| ||||||||||||||||| ||| || || |||||||| | Sbjct 3073415 TGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACCTTCTCGAATGAACTCATCTCTCGT 3073356 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 || ||||| |||| |||||| ||||| | || ||| | | | || || Sbjct 3073355 GATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTTCTCCCTTCTCAACACACGCCCA 3073296 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | ||| | | ||| ||||||| |||||| |||||||| |||||| Sbjct 3073295 AGCAAGAAGGAGGTCGAGCACATCATCACCGAGGCGGTCAAGATCGAGCAAGAGTTCCTC 3073236 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 ||||| || ||||| |||| ||||| || | || | | ||||| |||||||| Sbjct 3073235 ACCGAGGCACTGCC-TTGCGCGCTGCTCGGTATGAACTCTGGTCTGATGTGCCAATACAT 3073177 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||||||||||||| | ||||| | || | | ||||| |||||| | | Sbjct 3073176 CGAGTTCGTCGCCGACCGCCTGCTATTGTCTCTCGGCAATCCCAAGGTTTACAACGCCAC 3073117 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||| ||| | ||||||||||| Sbjct 3073116 CAACCCCTTCGACTTCATGGAGAACATCTCCTTGG 3073082 >seq3 Length=4703234 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||| || |||| ||||| ||| | Sbjct 3808734 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGC 3808793 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||||||||| ||||||| Sbjct 3808794 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 3808852 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||||||||| ||||| || |||| || || ||| ||| ||||| Sbjct 3808853 GCAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAA 3808912 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| |||||||| | || ||||| | ||| | || || | ||||| Sbjct 3808913 CATTCAGAAGGAATCGACCCTGCACTTGGTGCTCCGTCTGCGTGGCGG 3808960 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| |||| || ||| | | Sbjct 3808050 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATCG 3808109 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | ||||| ||||||||||| |||| || Sbjct 3808110 GATACCATCGACAACG-TGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 3808168 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||||||||| ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 3808169 ACAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAA 3808228 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 3808229 CATCCAGAAGGAGTCTACACTCCACCTCGT 3808258 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || || || |||| || ||| | | Sbjct 3808278 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAATCATCG 3808337 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| |||||||| || |||| || Sbjct 3808338 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGATCAA 3808397 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||||||||| ||||| || |||| || || ||| |||||||||| Sbjct 3808398 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGACTACAAC 3808457 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 3808458 ATCCAGAAGGAGTCCACCCTACA 3808480 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || ||||| ||||| || | || || ||| | || Sbjct 3808506 ATGCAAATTTTCGTCAAGACGCTTACCGGCAAGACCATTACGCTTGAGGTTGAATCATCC 3808565 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || || | ||||| |||||||||||| |||| || Sbjct 3808566 GATACTATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 3808624 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| || || ||||| || || | || || | | ||||||||| Sbjct 3808625 ACAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACGTTGAGCGACTACAA 3808684 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 3808685 CATCCAGAAGGAGTCAACCCTTCA 3808708 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| |||| || || || | |||| | | | | ||| Sbjct 3807844 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACAATCGACAATGTGAAGT 3807903 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||||||||| |||||||||| || | |||| ||| |||| Sbjct 3807904 CCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCTTGATCTTCGCCGGCA 3807963 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | |||||||| || | |||||||| |||||||||||||||||||||| | || || | Sbjct 3807964 AGCAGCTGGAAGATGGCCGCACCCTATCCGACTACAACATCCAGAAGGAGTCGACTCTTC 3808023 Query 40892 ATCTAGT 40898 | || || Sbjct 3808024 ACCTCGT 3808030 >seq7 Length=3010262 Score = 131 bits (144), Expect = 2e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 |||||||| ||||||||| | ||||| || || ||||||| ||||||||| ||||| || Sbjct 2377945 GACAAAGAAGGCATCCCCCCCGACCAACAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAG 2377886 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| |||| ||| |||||||||||||||||| | ||||||||||| || | Sbjct 2377885 GACGGCCGCACGCTCAGCGATTACAACATCCAGAAGGAGTCGACGCTGCATCTGGTCCTT 2377826 Query 40903 CGCTTGAGGGGCGGC 40917 || || | |||||| Sbjct 2377825 CGTCTGCGTGGCGGC 2377811 >seq8 Length=2851179 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 ||| ||| ||||| |||||||| ||| | |||||||| || | |||| ||| || || Sbjct 895150 AAACTTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGAAAG 895209 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| |||| |||||||| |||||||||||||||||||||| | || || || Sbjct 895210 CAGCTGGAAGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCAC 895269 Query 40894 CTAGT 40898 || || Sbjct 895270 CTCGT 895274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218877988000