Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1 181 1e-40
seq3 147 2e-30
seq7 131 2e-25
seq8 104 2e-17
>seq1
Length=5232100
Score = 181 bits (200), Expect = 1e-40
Identities = 212/283 (75%), Gaps = 5/283 (2%)
Strand=Plus/Minus
Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698
|||| |||||||| |||||||| || || |||||||||| ||| ||| | || || |||
Sbjct 3073933 TGGCAAATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAAGAGATCGATCTCTCC 3073874
Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755
|| ||| ||||||| | | | | || ||| | |||||| ||||| |||
Sbjct 3073873 AAAGACCTTCACGACTGGAACAAGAGGCTCAATGACGATGAGCGCTTCTTCATTTCACAC 3073814
Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTT 116814
|| || ||||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 3073813 GTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAATCTGGTCGAGCGCTTT 3073754
Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874
|| ||||| || | | |||||||| |||||||| ||||| |||||| |||||
Sbjct 3073753 AGC-GGCGAGGTACAAATACCAGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATGGA 3073695
Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||| | |||||||| | ||| ||| | |||||||| |||
Sbjct 3073694 GAACATCCACTCGGAGACGTACTCGCTGTTGATCGACACATAC 3073652
Score = 170 bits (188), Expect = 2e-37
Identities = 314/455 (69%), Gaps = 4/455 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040
|||||||||||||||| || ||||| | | || |||| || |||||| |||
Sbjct 3073534 AGAAGGCCGAGTGGGCAATGAAATGGATATCTGACA-AGAGCTCCACCTTCGCGTCGCGT 3073476
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
|| || ||||| || || |||||||| | ||||| || ||||| |||| ||
Sbjct 3073475 CTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTTCGCGTCCATCTTC 3073416
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| ||||| ||||||||||||||||| ||| || || |||||||| |
Sbjct 3073415 TGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACCTTCTCGAATGAACTCATCTCTCGT 3073356
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
|| ||||| |||| |||||| ||||| | || ||| | | | || ||
Sbjct 3073355 GATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTTCTCCCTTCTCAACACACGCCCA 3073296
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| | | ||| | | ||| ||||||| |||||| |||||||| ||||||
Sbjct 3073295 AGCAAGAAGGAGGTCGAGCACATCATCACCGAGGCGGTCAAGATCGAGCAAGAGTTCCTC 3073236
Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
||||| || ||||| |||| ||||| || | || | | ||||| ||||||||
Sbjct 3073235 ACCGAGGCACTGCC-TTGCGCGCTGCTCGGTATGAACTCTGGTCTGATGTGCCAATACAT 3073177
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
|||||||||||||||| | ||||| | || | | ||||| |||||| | |
Sbjct 3073176 CGAGTTCGTCGCCGACCGCCTGCTATTGTCTCTCGGCAATCCCAAGGTTTACAACGCCAC 3073117
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
|||||| | ||||| ||| | |||||||||||
Sbjct 3073116 CAACCCCTTCGACTTCATGGAGAACATCTCCTTGG 3073082
>seq3
Length=4703234
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || ||||| ||||| || |||| ||||| ||| |
Sbjct 3808734 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGC 3808793
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || || | ||||| ||||||||||| |||||||
Sbjct 3808794 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 3808852
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||||||||| ||||| || |||| || || ||| ||| |||||
Sbjct 3808853 GCAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAA 3808912
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| |||||||| | || ||||| | ||| | || || | |||||
Sbjct 3808913 CATTCAGAAGGAATCGACCCTGCACTTGGTGCTCCGTCTGCGTGGCGG 3808960
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| || ||||| |||| || ||| | |
Sbjct 3808050 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATCG 3808109
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| || || | ||||| ||||||||||| |||| ||
Sbjct 3808110 GATACCATCGACAACG-TGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 3808168
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| |||||||||| ||| ||||| ||||| || || | |||||||| |||||||||
Sbjct 3808169 ACAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTATCCGACTACAA 3808228
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 3808229 CATCCAGAAGGAGTCTACACTCCACCTCGT 3808258
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| || || || |||| || ||| | |
Sbjct 3808278 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAATCATCG 3808337
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || |||| ||||| |||||||| || |||| ||
Sbjct 3808338 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGATCAA 3808397
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| ||||||||| ||||| || |||| || || ||| ||||||||||
Sbjct 3808398 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGACTACAAC 3808457
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| |||| || ||
Sbjct 3808458 ATCCAGAAGGAGTCCACCCTACA 3808480
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || ||||| || ||||| ||||| || | || || ||| | ||
Sbjct 3808506 ATGCAAATTTTCGTCAAGACGCTTACCGGCAAGACCATTACGCTTGAGGTTGAATCATCC 3808565
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| ||||| || || | ||||| |||||||||||| |||| ||
Sbjct 3808566 GATACTATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 3808624
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||||| ||| || || ||||| || || | || || | | |||||||||
Sbjct 3808625 ACAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACGTTGAGCGACTACAA 3808684
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| | || || ||
Sbjct 3808685 CATCCAGAAGGAGTCAACCCTTCA 3808708
Score = 116 bits (128), Expect = 4e-21
Identities = 138/187 (74%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| ||||||||| |||| || || || | |||| | | | | |||
Sbjct 3807844 TCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACAATCGACAATGTGAAGT 3807903
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| || | ||||| ||||||||||| |||||||||| || | |||| ||| ||||
Sbjct 3807904 CCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCTTGATCTTCGCCGGCA 3807963
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| |||||||| || | |||||||| |||||||||||||||||||||| | || || |
Sbjct 3807964 AGCAGCTGGAAGATGGCCGCACCCTATCCGACTACAACATCCAGAAGGAGTCGACTCTTC 3808023
Query 40892 ATCTAGT 40898
| || ||
Sbjct 3808024 ACCTCGT 3808030
>seq7
Length=3010262
Score = 131 bits (144), Expect = 2e-25
Identities = 110/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
|||||||| ||||||||| | ||||| || || ||||||| ||||||||| ||||| ||
Sbjct 2377945 GACAAAGAAGGCATCCCCCCCGACCAACAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAG 2377886
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||| |||| ||| |||||||||||||||||| | ||||||||||| || |
Sbjct 2377885 GACGGCCGCACGCTCAGCGATTACAACATCCAGAAGGAGTCGACGCTGCATCTGGTCCTT 2377826
Query 40903 CGCTTGAGGGGCGGC 40917
|| || | ||||||
Sbjct 2377825 CGTCTGCGTGGCGGC 2377811
>seq8
Length=2851179
Score = 104 bits (114), Expect = 2e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
||| ||| ||||| |||||||| ||| | |||||||| || | |||| ||| || ||
Sbjct 895150 AAACTTCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGAAAG 895209
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
|||||||| |||| |||||||| |||||||||||||||||||||| | || || ||
Sbjct 895210 CAGCTGGAAGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCCTCCAC 895269
Query 40894 CTAGT 40898
|| ||
Sbjct 895270 CTCGT 895274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218877988000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |