Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4 224 9e-54
seq1 145 7e-30
seq3 122 8e-23
>seq4
Length=3241893
Score = 224 bits (248), Expect = 9e-54
Identities = 472/701 (67%), Gaps = 2/701 (0%)
Strand=Plus/Plus
Query 23277 CACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGT 23336
|||| ||| ||| || || || || ||| |||| |||||||| ||||| ||
Sbjct 827253 CACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCACATGAGTGTCCACTCGCCGT 827312
Query 23337 CATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGG 23396
| | ||||| |||| || || ||||| ||||| | ||||| || | || || |
Sbjct 827313 TCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAATAAGTCACGAG 827372
Query 23397 CGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCAT 23456
|||| || || |||||||| ||||| | || | ||| | || ||||| || |
Sbjct 827373 CGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAAACGTCGGCGT 827432
Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516
|||| ||||| ||||| | ||||||||| || || | || |||||||| ||||| || |
Sbjct 827433 GCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGCCTTGATCAACAT 827492
Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576
| | || || |||||||| || | ||||| || | ||||||||| |||| ||| |
Sbjct 827493 ACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTTG 827552
Query 23577 CGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636
|| | | | || | || |||| ||| || | | ||| || || ||
Sbjct 827553 TTCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCAGACCAATACCGCCTG 827612
Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696
| | ||| || ||||| ||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 827613 CGGTTTTGGAGATCATGGCGCACGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGTCCT 827672
Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTT-GCGCTTTGGGCGTAGCGGCCGAGAAC 23755
| || | ||| | ||| || || ||||||| | || |||| || | || |||
Sbjct 827673 CCTTCATATCGATGAGGAAGCAGGAGGACATTTGGGGCGATGGG-GTCCCCGCATTGAAG 827731
Query 23756 AGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCG 23815
|| ||||| ||||| || ||||| ||||||| |||||| || || || ||
Sbjct 827732 AGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTCGACATGTAATTGTATGTCTCAATTGCC 827791
Query 23816 GCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTC 23875
||| ||||| || || ||||| |||| || || ||||||| ||||| ||| || | |
Sbjct 827792 TTATCGATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCATGTGTTGTGGACGC 827851
Query 23876 TCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAA 23935
||| | | | |||| || || || ||||| |||| | || || || || ||
Sbjct 827852 TCGGCAATTTTGTCGTTTATGCGGAGGAGGTATGAGCGTTCAAGAGTCTTGAAACCGAAG 827911
Query 23936 TAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
| | ||||| ||||| ||||||| || || || || ||
Sbjct 827912 AACTGGTAGTTGAAGTCGCGATCGTAGACGATAGCGGAGTT 827952
>seq1
Length=5232100
Score = 145 bits (160), Expect = 7e-30
Identities = 264/383 (69%), Gaps = 14/383 (4%)
Strand=Plus/Minus
Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCG 57969
||||||||| |||||| |||| ||||||||| | ||| || |||| |||||
Sbjct 3073536 CAAGAAGGCCGAGTGGGCAATGAAATGGATATCTGACAAGAGCT----CCACCTTCGCGT 3073481
Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAA 58029
| | || | || || ||||| ||||| ||||| ||||| || ||| ||| | |
Sbjct 3073480 CGCGTCTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTTCGCGTCCA 3073421
Query 58030 TATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATAT 58089
| || ||| | ||||| ||||| || |||||||||||||| || || || | || |
Sbjct 3073420 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACCTTCTCGAATGAACTCATCT 3073361
Query 58090 CGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATA 58149
| || || ||||| | || || || || || ||||| | | ||| | || |||| |
Sbjct 3073360 CTCGTGATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTTCTC---CCTTCTCAACA 3073304
Query 58150 AA--CCGACGCGGGATCG-CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATG 58206
| || | || || | || | |||| ||||||||||||||| |||||| | |
Sbjct 3073303 CACGCCCAAGCAAGAAGGAGGTCGAGCACATCATCACCGAGGCGGTCAAGATCGAGCAAG 3073244
Query 58207 AGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAA 58266
|||| ||||||| || || || || |||||||||||||| || | ||||||
Sbjct 3073243 AGTTCCTCACCGAGGCACTGCCTTGCGCGCTGCTCGGTATGAACTCTGGTCTGATGTGCC 3073184
Query 58267 AGTACATTGAGTTTGTTGCCGAC 58289
| ||||| ||||| || ||||||
Sbjct 3073183 AATACATCGAGTTCGTCGCCGAC 3073161
Score = 102 bits (112), Expect = 7e-17
Identities = 192/282 (68%), Gaps = 3/282 (1%)
Strand=Plus/Minus
Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632
||| | |||||||| ||||| ||||| || || ||||||| |||||| | || || ||
Sbjct 3073933 TGGCAAATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAAGAGATCGATCTCTCC 3073874
Query 57633 AAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689
|| || || ||| ||| | ||||| || |||| | || ||| ||||
Sbjct 3073873 AAAGACCTTCACGACTGGAACAAGAGGCTCAATGACGATGAGCGCTTCTTCATTTCACAC 3073814
Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749
|| | || || |||||||||||||| || || || ||||||||| ||||||| | |||
Sbjct 3073813 GTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAATCTGGTCGAGCGCTTT 3073754
Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809
|| || ||| | | |||||| ||||||| || || || || | || ||
Sbjct 3073753 AGCGGCGAGGTACAAATACCAGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATGGAG 3073694
Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851
||| | || || || | ||| ||||| | ||||| || |||
Sbjct 3073693 AACATCCACTCGGAGACGTACTCGCTGTTGATCGACACATAC 3073652
>seq3
Length=4703234
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||||||||| ||||| || || || |||| || || | |
Sbjct 3808734 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGC 3808793
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || || ||||||||| ||| | || || ||||||
Sbjct 3808794 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 3808853
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || ||||| ||||| ||| | |||||| ||| | |||||| |||
Sbjct 3808854 CAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAAC 3808913
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| || |||||||| || || |||| || | ||| | |||||
Sbjct 3808914 ATTCAGAAGGAATCGACCCTGCACTTGGTGCTCCGTCTGCGTGGCGG 3808960
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| || || ||||| || || || | || |||||| | |||
Sbjct 3808506 ATGCAAATTTTCGTCAAGACGCTTACCGGCAAGACCATTACGCTTGAGGTTGAATCATCC 3808565
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| | ||||| || || ||||||||| ||| | || || || ||
Sbjct 3808566 GATACTATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAA 3808625
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| || || ||| | || || || ||||||| || |||
Sbjct 3808626 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACGTTGAGCGACTACAAC 3808685
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || || || ||||| |||| || | ||| | || ||||
Sbjct 3808686 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGCGGTGGTA 3808734
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| |||||||| |||| || ||| | ||
Sbjct 3808049 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATC 3808108
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | |||| | || || || || ||||||||| ||| | || || || ||
Sbjct 3808109 GGATACCATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 3808168
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||| || || ||||||||||| ||| | || ||
Sbjct 3808169 ACAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGA 3808204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766121396000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |