Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 224 9e-54 seq1 145 7e-30 seq3 122 8e-23 >seq4 Length=3241893 Score = 224 bits (248), Expect = 9e-54 Identities = 472/701 (67%), Gaps = 2/701 (0%) Strand=Plus/Plus Query 23277 CACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGT 23336 |||| ||| ||| || || || || ||| |||| |||||||| ||||| || Sbjct 827253 CACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCACATGAGTGTCCACTCGCCGT 827312 Query 23337 CATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGG 23396 | | ||||| |||| || || ||||| ||||| | ||||| || | || || | Sbjct 827313 TCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAATAAGTCACGAG 827372 Query 23397 CGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCAT 23456 |||| || || |||||||| ||||| | || | ||| | || ||||| || | Sbjct 827373 CGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAAACGTCGGCGT 827432 Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516 |||| ||||| ||||| | ||||||||| || || | || |||||||| ||||| || | Sbjct 827433 GCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGCCTTGATCAACAT 827492 Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576 | | || || |||||||| || | ||||| || | ||||||||| |||| ||| | Sbjct 827493 ACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGACGTGCCATTTG 827552 Query 23577 CGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636 || | | | || | || |||| ||| || | | ||| || || || Sbjct 827553 TTCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCAGACCAATACCGCCTG 827612 Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696 | | ||| || ||||| ||||| ||||| ||||| |||||||||||||||||||||| Sbjct 827613 CGGTTTTGGAGATCATGGCGCACGTCTTCAGTGTGTCATAGATGCCCTCGATGCTGTCCT 827672 Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTT-GCGCTTTGGGCGTAGCGGCCGAGAAC 23755 | || | ||| | ||| || || ||||||| | || |||| || | || ||| Sbjct 827673 CCTTCATATCGATGAGGAAGCAGGAGGACATTTGGGGCGATGGG-GTCCCCGCATTGAAG 827731 Query 23756 AGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCG 23815 || ||||| ||||| || ||||| ||||||| |||||| || || || || Sbjct 827732 AGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTCGACATGTAATTGTATGTCTCAATTGCC 827791 Query 23816 GCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTC 23875 ||| ||||| || || ||||| |||| || || ||||||| ||||| ||| || | | Sbjct 827792 TTATCGATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCATGTGTTGTGGACGC 827851 Query 23876 TCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAA 23935 ||| | | | |||| || || || ||||| |||| | || || || || || Sbjct 827852 TCGGCAATTTTGTCGTTTATGCGGAGGAGGTATGAGCGTTCAAGAGTCTTGAAACCGAAG 827911 Query 23936 TAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 | | ||||| ||||| ||||||| || || || || || Sbjct 827912 AACTGGTAGTTGAAGTCGCGATCGTAGACGATAGCGGAGTT 827952 >seq1 Length=5232100 Score = 145 bits (160), Expect = 7e-30 Identities = 264/383 (69%), Gaps = 14/383 (4%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCG 57969 ||||||||| |||||| |||| ||||||||| | ||| || |||| ||||| Sbjct 3073536 CAAGAAGGCCGAGTGGGCAATGAAATGGATATCTGACAAGAGCT----CCACCTTCGCGT 3073481 Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAA 58029 | | || | || || ||||| ||||| ||||| ||||| || ||| ||| | | Sbjct 3073480 CGCGTCTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTTCGCGTCCA 3073421 Query 58030 TATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATAT 58089 | || ||| | ||||| ||||| || |||||||||||||| || || || | || | Sbjct 3073420 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACCTTCTCGAATGAACTCATCT 3073361 Query 58090 CGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATA 58149 | || || ||||| | || || || || || ||||| | | ||| | || |||| | Sbjct 3073360 CTCGTGATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTTCTC---CCTTCTCAACA 3073304 Query 58150 AA--CCGACGCGGGATCG-CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATG 58206 | || | || || | || | |||| ||||||||||||||| |||||| | | Sbjct 3073303 CACGCCCAAGCAAGAAGGAGGTCGAGCACATCATCACCGAGGCGGTCAAGATCGAGCAAG 3073244 Query 58207 AGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAA 58266 |||| ||||||| || || || || |||||||||||||| || | |||||| Sbjct 3073243 AGTTCCTCACCGAGGCACTGCCTTGCGCGCTGCTCGGTATGAACTCTGGTCTGATGTGCC 3073184 Query 58267 AGTACATTGAGTTTGTTGCCGAC 58289 | ||||| ||||| || |||||| Sbjct 3073183 AATACATCGAGTTCGTCGCCGAC 3073161 Score = 102 bits (112), Expect = 7e-17 Identities = 192/282 (68%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| ||||| || || ||||||| |||||| | || || || Sbjct 3073933 TGGCAAATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAAGAGATCGATCTCTCC 3073874 Query 57633 AAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 || || || ||| ||| | ||||| || |||| | || ||| |||| Sbjct 3073873 AAAGACCTTCACGACTGGAACAAGAGGCTCAATGACGATGAGCGCTTCTTCATTTCACAC 3073814 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 || | || || |||||||||||||| || || || ||||||||| ||||||| | ||| Sbjct 3073813 GTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAATCTGGTCGAGCGCTTT 3073754 Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 || || ||| | | |||||| ||||||| || || || || | || || Sbjct 3073753 AGCGGCGAGGTACAAATACCAGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATGGAG 3073694 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851 ||| | || || || | ||| ||||| | ||||| || ||| Sbjct 3073693 AACATCCACTCGGAGACGTACTCGCTGTTGATCGACACATAC 3073652 >seq3 Length=4703234 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||||||||| ||||| || || || |||| || || | | Sbjct 3808734 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCAGC 3808793 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || |||||| Sbjct 3808794 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 3808853 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| | |||||| ||| | |||||| ||| Sbjct 3808854 CAGCGGCTCATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGAACTCTCTCCGATTACAAC 3808913 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || |||||||| || || |||| || | ||| | ||||| Sbjct 3808914 ATTCAGAAGGAATCGACCCTGCACTTGGTGCTCCGTCTGCGTGGCGG 3808960 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || ||||| || || || | || |||||| | ||| Sbjct 3808506 ATGCAAATTTTCGTCAAGACGCTTACCGGCAAGACCATTACGCTTGAGGTTGAATCATCC 3808565 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | ||||| || || ||||||||| ||| | || || || || Sbjct 3808566 GATACTATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAA 3808625 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| | || || || ||||||| || ||| Sbjct 3808626 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACGTTGAGCGACTACAAC 3808685 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || ||||| |||| || | ||| | || |||| Sbjct 3808686 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTGCGCGGTGGTA 3808734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| |||||||| |||| || ||| | || Sbjct 3808049 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTGGAATCATC 3808108 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || || || ||||||||| ||| | || || || || Sbjct 3808109 GGATACCATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 3808168 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||||||||| ||| | || || Sbjct 3808169 ACAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGA 3808204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766121396000