Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq4 203 4e-47
seq1 87.8 2e-12
>seq4
Length=3241893
Score = 203 bits (224), Expect = 4e-47
Identities = 592/899 (66%), Gaps = 12/899 (1%)
Strand=Plus/Plus
Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248
|||||||| || || |||| | | | | ||||||||| | ||| ||||| | | |
Sbjct 827243 TCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCACATGAGTGTC 827302
Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308
||||| |||| |||| ||| || ||||| || || || |||||||| | || ||||
Sbjct 827303 CACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAAT 827362
Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368
| || | | | | ||| || || || |||||| || || ||||| | | |
Sbjct 827363 AAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAA 827422
Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428
| || | ||||| || |||| ||| ||||| | | || || |||||||| || ||
Sbjct 827423 ACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGCCT 827482
Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488
||||| | || |||||||| || || || || | | ||| || || | |||||| ||
Sbjct 827483 TGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGAC 827542
Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTGATAGAC 63546
| ||||| || || || ||| | || | |||||||| | ||| | |||
Sbjct 827543 GTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCA--GAC 827600
Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATGCCT 63605
| || || ||||| |||| ||||| | ||||| ||| || | ||||||||||||||
Sbjct 827601 CAATACCGCCTGCGGTTTTGGAGATCATGGCGCA-CGTCTTCAGTGTGTCATAGATGCCC 827659
Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-GTAGT 63664
|| ||||| || || |||| | | || || ||| ||||||||| | ||| | ||
Sbjct 827660 TCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTGG-GGCGATGGGGT 827718
Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA-TTTTTCAGAAAGTAGATTGT 63723
|||||||| || | ||| || |||||||| || || | || || | ||| |||||
Sbjct 827719 CCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTCGACATGTA-ATTGT 827777
Query 63724 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63783
| |||||||| || || || || ||| || || || | |||||||| | ||
Sbjct 827778 ATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCA 827837
Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843
|||| || || | || ||||||||| |||||| | | ||| || ||| | ||
Sbjct 827838 TGTGTTGTGGACGCTCGGCAATTTTGTCGTTTATGCGGAGGAGGTATGAGCGTTCAAGAG 827897
Query 63844 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903
| || ||||| || | | ||| ||||| || ||||| | ||| | || ||||| |
Sbjct 827898 TCTTGAAACCGAAGAACTGGTAGTTGAAGTCGCGATCGTAGACGATAGCGGAGTTGAGAT 827957
Query 63904 TATCCTTATATTTGTTAACTATATCCATGGTAATAC-TTGAAATAATCGGAGAATGTTTC 63962
|| | ||| | || || | | | | || ||||||| ||||| ||
Sbjct 827958 CGTCAGCGTGTTTCATGACGATGT-CGTAGACCGACTTTGAAATCATCGGCTGGCTCTTG 828016
Query 63963 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 64022
||||| || || || ||||| ||| | | || | | || | ||| | |||||
Sbjct 828017 CCATTCTTTGGGTTGACATAATTGTAGAGGTCTTGTACGACAACCGAGAATTGCTTTTTG 828076
Query 64023 GTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081
|||| ||||| ||||| || | || || | || || || |||||||| || |||||
Sbjct 828077 GTTTGTTTGTGGAGATTCGAGACAGCGATACGTGCTGCGAGGATGGCATATTCGGGATG 828135
>seq1
Length=5232100
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| ||||| ||| ||||| ||||| || | | || | ||| || || || || ||
Sbjct 3073327 CAGGCGAAGTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGG 3073386
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||| || || ||||| || ||||| || ||||| ||||| ||||| |||||
Sbjct 3073387 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAGGATCCACTGAAGAAA 3073446
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33758
|| || || || || |||||||| | ||| | | | | || ||| |||| |
Sbjct 3073447 ATACCCTCGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTGGAGCTCTTGTCAGAT 3073506
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33787
||||| || ||||| |||||||||||
Sbjct 3073507 ATCCATTTCATTGCCCACTCGGCCTTCTT 3073535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817206364000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |