Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 203 4e-47 seq1 87.8 2e-12 >seq4 Length=3241893 Score = 203 bits (224), Expect = 4e-47 Identities = 592/899 (66%), Gaps = 12/899 (1%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| || || |||| | | | | ||||||||| | ||| ||||| | | | Sbjct 827243 TCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCACATGAGTGTC 827302 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 ||||| |||| |||| ||| || ||||| || || || |||||||| | || |||| Sbjct 827303 CACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAAT 827362 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 | || | | | | ||| || || || |||||| || || ||||| | | | Sbjct 827363 AAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAA 827422 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 | || | ||||| || |||| ||| ||||| | | || || |||||||| || || Sbjct 827423 ACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGCCT 827482 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 ||||| | || |||||||| || || || || | | ||| || || | |||||| || Sbjct 827483 TGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGAC 827542 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTGATAGAC 63546 | ||||| || || || ||| | || | |||||||| | ||| | ||| Sbjct 827543 GTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCA--GAC 827600 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATGCCT 63605 | || || ||||| |||| ||||| | ||||| ||| || | |||||||||||||| Sbjct 827601 CAATACCGCCTGCGGTTTTGGAGATCATGGCGCA-CGTCTTCAGTGTGTCATAGATGCCC 827659 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-GTAGT 63664 || ||||| || || |||| | | || || ||| ||||||||| | ||| | || Sbjct 827660 TCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTGG-GGCGATGGGGT 827718 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA-TTTTTCAGAAAGTAGATTGT 63723 |||||||| || | ||| || |||||||| || || | || || | ||| ||||| Sbjct 827719 CCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTCGACATGTA-ATTGT 827777 Query 63724 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63783 | |||||||| || || || || ||| || || || | |||||||| | || Sbjct 827778 ATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCA 827837 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 |||| || || | || ||||||||| |||||| | | ||| || ||| | || Sbjct 827838 TGTGTTGTGGACGCTCGGCAATTTTGTCGTTTATGCGGAGGAGGTATGAGCGTTCAAGAG 827897 Query 63844 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903 | || ||||| || | | ||| ||||| || ||||| | ||| | || ||||| | Sbjct 827898 TCTTGAAACCGAAGAACTGGTAGTTGAAGTCGCGATCGTAGACGATAGCGGAGTTGAGAT 827957 Query 63904 TATCCTTATATTTGTTAACTATATCCATGGTAATAC-TTGAAATAATCGGAGAATGTTTC 63962 || | ||| | || || | | | | || ||||||| ||||| || Sbjct 827958 CGTCAGCGTGTTTCATGACGATGT-CGTAGACCGACTTTGAAATCATCGGCTGGCTCTTG 828016 Query 63963 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 64022 ||||| || || || ||||| ||| | | || | | || | ||| | ||||| Sbjct 828017 CCATTCTTTGGGTTGACATAATTGTAGAGGTCTTGTACGACAACCGAGAATTGCTTTTTG 828076 Query 64023 GTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 |||| ||||| ||||| || | || || | || || || |||||||| || ||||| Sbjct 828077 GTTTGTTTGTGGAGATTCGAGACAGCGATACGTGCTGCGAGGATGGCATATTCGGGATG 828135 >seq1 Length=5232100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||| ||||| || | | || | ||| || || || || || Sbjct 3073327 CAGGCGAAGTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGG 3073386 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || ||||| ||||| ||||| ||||| Sbjct 3073387 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAGGATCCACTGAAGAAA 3073446 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33758 || || || || || |||||||| | ||| | | | | || ||| |||| | Sbjct 3073447 ATACCCTCGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTGGAGCTCTTGTCAGAT 3073506 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 ||||| || ||||| ||||||||||| Sbjct 3073507 ATCCATTTCATTGCCCACTCGGCCTTCTT 3073535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817206364000