Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 >seq4 Length=3241893 Score = 185 bits (204), Expect = 1e-41 Identities = 588/899 (65%), Gaps = 12/899 (1%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 |||||||| || || || | | ||| ||||||||||| ||||| ||||| | || | Sbjct 827243 TCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCACATGAGTGTC 827302 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 ||||| || | || | || || ||||| || || || |||||||| | || |||| Sbjct 827303 CACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAAT 827362 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 | || | | | | || || || || |||||| || || ||||| | | | Sbjct 827363 AAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAA 827422 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | || | ||||| || |||| ||| ||||| | | || || |||||||| || || Sbjct 827423 ACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGCCT 827482 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||| | || |||||||| || || || || | | ||| || || | ||| || || Sbjct 827483 TGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGAC 827542 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGAC 72301 | ||||| || || || ||| || | |||||||| || ||| | ||| Sbjct 827543 GTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATTCA--GAC 827600 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCCC 72360 | || || ||||| |||| ||||| | ||||| ||| || | || |||||||||||| Sbjct 827601 CAATACCGCCTGCGGTTTTGGAGATCATGGCGCA-CGTCTTCAGTGTGTCATAGATGCCC 827659 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-CTAGT 72419 || || || || ||| |||| | | || || ||| ||||||||| | ||| || Sbjct 827660 TCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTGG-GGCGATGGGGT 827718 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGT 72478 |||||||| || | ||| || |||||||| || || | || |||| ||| ||||| Sbjct 827719 CCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTCGACATGTA-ATTGT 827777 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 | |||||||| || || || || |||||| || || | |||||||| | || Sbjct 827778 ATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCA 827837 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | || || || | || | || |||| ||||| | | ||| || ||| | || Sbjct 827838 TGTGTTGTGGACGCTCGGCAATTTTGTCGTTTATGCGGAGGAGGTATGAGCGTTCAAGAG 827897 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || ||||| || | | ||| ||||| || ||||| | ||| | || ||||| | Sbjct 827898 TCTTGAAACCGAAGAACTGGTAGTTGAAGTCGCGATCGTAGACGATAGCGGAGTTGAGAT 827957 Query 72659 TATCCTTATATTTGTTAACTATATCCATGGTGATAC-TTGAAATAATCGGAGAATGTTTC 72717 || | ||| | || || | | | | || ||||||| ||||| || Sbjct 827958 CGTCAGCGTGTTTCATGACGATGT-CGTAGACCGACTTTGAAATCATCGGCTGGCTCTTG 828016 Query 72718 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 72777 ||||| || || || ||||| ||| | | || | | || | ||| | ||||| Sbjct 828017 CCATTCTTTGGGTTGACATAATTGTAGAGGTCTTGTACGACAACCGAGAATTGCTTTTTG 828076 Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 |||| ||||| ||||| || || || || | || || || |||||||| || ||||| Sbjct 828077 GTTTGTTTGTGGAGATTCGAGACAGCGATACGTGCTGCGAGGATGGCATATTCGGGATG 828135 Score = 140 bits (154), Expect = 4e-28 Identities = 358/540 (66%), Gaps = 9/540 (2%) Strand=Plus/Plus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 ||||| ||| | || ||||| ||||||| || || || |||| || || |||||||| Sbjct 826029 TTCCTGGTCGACAGTGAACTGGATGGGAGCAGAAGCCGCCATCGTTCGAAGGTAGTACAT 826088 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCT 70907 ||| || || |||||||| |||| || ||| |||||| || | ||| | | Sbjct 826089 GCCCGTCTTGAGACCGAGCTTCCACCCAGCAAAGTGCATAGAGGTGATCTTGCCCATGGT 826148 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 ||| || ||||| ||||| | |||||| || ||||||||||| || | ||||| Sbjct 826149 AGGTTCCTTCATGTGGATATTGAGAGACTGAGACTGGTCGATGAAGGCGCCACGATCTGC 826208 Query 70968 AGCCATTTTTATGAT-CGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAA 71026 |||||| | | ||| ||| | |||| |||||||| | ||| || || | | || | Sbjct 826209 AGCCATCTGCAGGATATGTC-TCTGTGAGATTTCCCACACAGTCTTGTAGAGTGCTTTGA 826267 Query 71027 TATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTT 71083 |||| || || | ||| | | |||||| || ||||| || || || |||||||| | Sbjct 826268 TATCATCGGGGATGTTGGGGATCCGCTGAATAGAGCCACCTTCGGCGATGATCCTATTCT 826327 Query 71084 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTA 71143 | || | || ||| || | ||| | | || | || | ||||| || | Sbjct 826328 TCATGTTGTCGGACCACAAGCCCATGTCGACAAGATCTTTGAGCAACCAGGGATTGACGA 826387 Query 71144 CTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 || || || |||| | || | || | ||| || || |||||| || || | Sbjct 826388 TCTGGAACTCGCCAGCGAGAACACGGCGGGAGTAGATGTTGGAGGTATAAGGCTCAAAGC 826447 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGAC 71263 | || || || || | ||| |||| || || |||||||||||||| ||||| | || Sbjct 826448 ATTCGTTGTTACCGAGAATCTGAGATGTAGAGGCAGTCGGCATAGGAGCCACGAGAAGGG 826507 Query 71264 TATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 || | || |||||| | || || | | |||| |||| ||||| | ||||||||| Sbjct 826508 AGTTGCGGAGGCCATGT--TGGGCAATCTCAGCTTTGAGAGCATCCCAGTCCCAAAGATC 826565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138780538000