Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 138 2e-27 seq4 104 3e-17 seq9 93.3 6e-14 >seq1 Length=5232100 Score = 138 bits (152), Expect = 2e-27 Identities = 231/331 (70%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| ||||| | || ||||| ||||| | ||||||| ||||||| ||| Sbjct 3073933 TGGCAAATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAAGAGATCGATCTCTCC 3073874 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 || ||||| |||| ||| | | | | | ||| |||||| || || || ||| Sbjct 3073873 AAAGACCTTCACGACTGGAACAAGAGGCTCAATGACGATGAGCGCTTCTTCATTTCACAC 3073814 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 | | |||||||| |||| ||||| || ||||||||||| |||||| | || || Sbjct 3073813 GTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAATCTGGTCGAGCGCTTT 3073754 Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAG 125261 ||| | || ||||||| | ||||| || || ||||| |||||||| ||| Sbjct 3073753 AGCGGCGAGGTACAAATACCAGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATGGAG 3073694 Query 125262 AACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCAA 125318 ||| | |||||||| | |||||| |||| |||| ||||| |||| || |||| Sbjct 3073693 AACATCCACTCGGAGACGTACTCGCTGTTGATCGACACATACATCAGCGAGCCCAAGCAA 3073634 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACA 125349 || ||| || || || || || || |||| Sbjct 3073633 CG--CACATAT-CTGTTCAATGCCATTGACA 3073606 Score = 116 bits (128), Expect = 5e-21 Identities = 286/432 (66%), Gaps = 15/432 (3%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || || ||||| || ||||| || ||||| || || ||| ||||||| Sbjct 3073475 CTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTTCGCGTCCATCTTC 3073416 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||||||||| ||||||||||| ||||| | || || | || ||||| Sbjct 3073415 TGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACCTTCTCGAATGAACTCATCTCTCGT 3073356 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606 || |||||| | ||| ||||| ||| || || || || || || | | Sbjct 3073355 GATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTT------CTCCCT---TCTCAAC 3073305 Query 125607 TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | | ||| | | ||||| |||| | ||||| || || | ||| || ||| Sbjct 3073304 ACACGCCCAAGCAAGAAGGAGGTCGAGCACATCATCACCGAGGCGGTCAAGATCGAGCAA 3073245 Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726 ||||| || ||||| | || || | || | || ||||||| || |||||| Sbjct 3073244 GAGTTCCTCACCGAGGCACTGCCTTGCGCGCTGCTCGGTATGAACTCTGGTCTGATGTGC 3073185 Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---CGCAAGATT 125783 | ||||| ||||| || || || || || || | || | ||| | |||| || Sbjct 3073184 CAATACATCGAGTTCGTCGCCGACCGCCTGCTAT---TGTCTCTCGGCAATCCCAAGGTT 3073128 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 |||||||||| || ||||| || |||||| | ||| || | | || ||||||||| Sbjct 3073127 TACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCTTGGCCGGCAAGACCAAC 3073068 Query 125844 TTTTTCGAGAAG 125855 || ||||||||| Sbjct 3073067 TTCTTCGAGAAG 3073056 >seq4 Length=3241893 Score = 104 bits (114), Expect = 3e-17 Identities = 289/432 (67%), Gaps = 11/432 (3%) Strand=Plus/Minus Query 96646 ATCGTTCCAACTATGCCTCTTGCTATCTGCTCGAACTCAAAGAGGACAGCATCGGTGGCG 96705 |||| |||| | | |||| |||| || |||| | || ||||||||||||| ||| Sbjct 827713 ATCGCCCCAAATGT-CCTCCTGCTTCCTCATCGATATGAAGGAGGACAGCATCGAGGGCA 827655 Query 96706 T-TATGGACACGCTAAAGGACGCG-GCCACCATTTCAAAACACTGTGGCGGTGTAGGTTT 96763 | |||| |||| || ||| ||| | |||| || || ||| | |||||| | ||| | Sbjct 827654 TCTATG-ACACACTGAAG-ACGTGCGCCATGATCTCCAAAACCGCAGGCGGTATTGGTCT 827597 Query 96764 GCATGTGCACAAGTTGCGCTGTAAAAACTC-TACGATTCATTCAACAAACGGCAACGCCA 96822 | |||| ||| | | || || | ||| ||| | |||||| |||| | | Sbjct 827596 GAATGTCCACCGGATTCGTGCTACCGGGGCCTAC-ATTGGTGGAACAAATGGCACGTCGA 827538 Query 96823 GTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA--TACGTTACACAGGG 96880 || || | || ||||| | | ||||| |||| | | | || ||| || || Sbjct 827537 ACGGTCTCATCCCTATGCTTCGTGTCTACAA--CAATACCGCTAGGTATGTTGATCAAGG 827480 Query 96881 CGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTT 96940 |||||| ||||| ||||| || | ||| ||||| |||| || |||||||| |||||||| Sbjct 827479 CGGCAACAAACGCCCAGGTGCGTTTGCCATCTACCTGGAGCCATGGCACGCCGACGTTTT 827420 Query 96941 TGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTT 97000 | ||| | || | || || || |||| ||||| | || || | ||||| || Sbjct 827419 CGGCTTCCTTGACCTCCGGAAGAATCATGGCAAAGAAGAAGTTCGCGCTCGTGACTTATT 827360 Query 97001 TTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAG 97060 ||| || | ||| | || || |||||||||||||||| | || ||| | |||| Sbjct 827359 TTACGCGTTGTGGATTCCGGACCTGTTCATGAAGCGCGTGCAGGAGAACGGCGAGTGGAC 827300 Query 97061 CCTAATGTGCCC 97072 || |||||||| Sbjct 827299 ACTCATGTGCCC 827288 >seq9 Length=2409284 Score = 93.3 bits (102), Expect = 6e-14 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 ||||||||||||||||| || ||||| || |||||| |||||| ||| || |||| | Sbjct 2040722 GAGGGCGATCTGGGGCCTGTATACGGCTTTCAGTGGCGGCACTTTGGCGCCGAGTACAAA 2040781 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACAC 70182 | ||| ||||| | || ||||| || || ||||| || || | |||| || | Sbjct 2040782 GGGCACGATGTGGACTACACAGGACAGGGCGTCGACCAATTGGCCGA-AGTCATCGATAA 2040840 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 || || | ||| || || || |||| || || | | ||||| || || ||| | Sbjct 2040841 ACTGAAAAACAAGCCGTATGACAGACGGATTATACTGAGTGCGTGGAACCCGGCGGATCT 2040900 Query 70243 GCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288 | | | ||||| || || ||||| ||| ||||| |||||||||||| Sbjct 2040901 GAAGAAGATGGCGCTTCCGCCGTGCCACATGTTT-GCTCAGTTTTAC 2040946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058736838000