Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 2e-27
seq4 104 3e-17
seq9 93.3 6e-14
>seq1
Length=5232100
Score = 138 bits (152), Expect = 2e-27
Identities = 231/331 (70%), Gaps = 6/331 (2%)
Strand=Plus/Minus
Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081
||| |||||||||| ||||| | || ||||| ||||| | ||||||| ||||||| |||
Sbjct 3073933 TGGCAAATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAAGAGATCGATCTCTCC 3073874
Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141
|| ||||| |||| ||| | | | | | ||| |||||| || || || |||
Sbjct 3073873 AAAGACCTTCACGACTGGAACAAGAGGCTCAATGACGATGAGCGCTTCTTCATTTCACAC 3073814
Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201
| | |||||||| |||| ||||| || ||||||||||| |||||| | || ||
Sbjct 3073813 GTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAATCTGGTCGAGCGCTTT 3073754
Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAG 125261
||| | || ||||||| | ||||| || || ||||| |||||||| |||
Sbjct 3073753 AGCGGCGAGGTACAAATACCAGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATGGAG 3073694
Query 125262 AACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCAA 125318
||| | |||||||| | |||||| |||| |||| ||||| |||| || ||||
Sbjct 3073693 AACATCCACTCGGAGACGTACTCGCTGTTGATCGACACATACATCAGCGAGCCCAAGCAA 3073634
Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACA 125349
|| ||| || || || || || || ||||
Sbjct 3073633 CG--CACATAT-CTGTTCAATGCCATTGACA 3073606
Score = 116 bits (128), Expect = 5e-21
Identities = 286/432 (66%), Gaps = 15/432 (3%)
Strand=Plus/Minus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
|| || || || ||||| || ||||| || ||||| || || ||| |||||||
Sbjct 3073475 CTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTTCGCGTCCATCTTC 3073416
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||||||||||||||||| ||||||||||| ||||| | || || | || |||||
Sbjct 3073415 TGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTGACCTTCTCGAATGAACTCATCTCTCGT 3073356
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606
|| |||||| | ||| ||||| ||| || || || || || || | |
Sbjct 3073355 GATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTT------CTCCCT---TCTCAAC 3073305
Query 125607 TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666
| | ||| | | ||||| |||| | ||||| || || | ||| || |||
Sbjct 3073304 ACACGCCCAAGCAAGAAGGAGGTCGAGCACATCATCACCGAGGCGGTCAAGATCGAGCAA 3073245
Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726
||||| || ||||| | || || | || | || ||||||| || ||||||
Sbjct 3073244 GAGTTCCTCACCGAGGCACTGCCTTGCGCGCTGCTCGGTATGAACTCTGGTCTGATGTGC 3073185
Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---CGCAAGATT 125783
| ||||| ||||| || || || || || || | || | ||| | |||| ||
Sbjct 3073184 CAATACATCGAGTTCGTCGCCGACCGCCTGCTAT---TGTCTCTCGGCAATCCCAAGGTT 3073128
Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843
|||||||||| || ||||| || |||||| | ||| || | | || |||||||||
Sbjct 3073127 TACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCTTGGCCGGCAAGACCAAC 3073068
Query 125844 TTTTTCGAGAAG 125855
|| |||||||||
Sbjct 3073067 TTCTTCGAGAAG 3073056
>seq4
Length=3241893
Score = 104 bits (114), Expect = 3e-17
Identities = 289/432 (67%), Gaps = 11/432 (3%)
Strand=Plus/Minus
Query 96646 ATCGTTCCAACTATGCCTCTTGCTATCTGCTCGAACTCAAAGAGGACAGCATCGGTGGCG 96705
|||| |||| | | |||| |||| || |||| | || ||||||||||||| |||
Sbjct 827713 ATCGCCCCAAATGT-CCTCCTGCTTCCTCATCGATATGAAGGAGGACAGCATCGAGGGCA 827655
Query 96706 T-TATGGACACGCTAAAGGACGCG-GCCACCATTTCAAAACACTGTGGCGGTGTAGGTTT 96763
| |||| |||| || ||| ||| | |||| || || ||| | |||||| | ||| |
Sbjct 827654 TCTATG-ACACACTGAAG-ACGTGCGCCATGATCTCCAAAACCGCAGGCGGTATTGGTCT 827597
Query 96764 GCATGTGCACAAGTTGCGCTGTAAAAACTC-TACGATTCATTCAACAAACGGCAACGCCA 96822
| |||| ||| | | || || | ||| ||| | |||||| |||| | |
Sbjct 827596 GAATGTCCACCGGATTCGTGCTACCGGGGCCTAC-ATTGGTGGAACAAATGGCACGTCGA 827538
Query 96823 GTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA--TACGTTACACAGGG 96880
|| || | || ||||| | | ||||| |||| | | | || ||| || ||
Sbjct 827537 ACGGTCTCATCCCTATGCTTCGTGTCTACAA--CAATACCGCTAGGTATGTTGATCAAGG 827480
Query 96881 CGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTT 96940
|||||| ||||| ||||| || | ||| ||||| |||| || |||||||| ||||||||
Sbjct 827479 CGGCAACAAACGCCCAGGTGCGTTTGCCATCTACCTGGAGCCATGGCACGCCGACGTTTT 827420
Query 96941 TGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTT 97000
| ||| | || | || || || |||| ||||| | || || | ||||| ||
Sbjct 827419 CGGCTTCCTTGACCTCCGGAAGAATCATGGCAAAGAAGAAGTTCGCGCTCGTGACTTATT 827360
Query 97001 TTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAG 97060
||| || | ||| | || || |||||||||||||||| | || ||| | ||||
Sbjct 827359 TTACGCGTTGTGGATTCCGGACCTGTTCATGAAGCGCGTGCAGGAGAACGGCGAGTGGAC 827300
Query 97061 CCTAATGTGCCC 97072
|| ||||||||
Sbjct 827299 ACTCATGTGCCC 827288
>seq9
Length=2409284
Score = 93.3 bits (102), Expect = 6e-14
Identities = 160/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123
||||||||||||||||| || ||||| || |||||| |||||| ||| || |||| |
Sbjct 2040722 GAGGGCGATCTGGGGCCTGTATACGGCTTTCAGTGGCGGCACTTTGGCGCCGAGTACAAA 2040781
Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACAC 70182
| ||| ||||| | || ||||| || || ||||| || || | |||| || |
Sbjct 2040782 GGGCACGATGTGGACTACACAGGACAGGGCGTCGACCAATTGGCCGA-AGTCATCGATAA 2040840
Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242
|| || | ||| || || || |||| || || | | ||||| || || ||| |
Sbjct 2040841 ACTGAAAAACAAGCCGTATGACAGACGGATTATACTGAGTGCGTGGAACCCGGCGGATCT 2040900
Query 70243 GCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC 70288
| | | ||||| || || ||||| ||| ||||| ||||||||||||
Sbjct 2040901 GAAGAAGATGGCGCTTCCGCCGTGCCACATGTTT-GCTCAGTTTTAC 2040946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058736838000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |