Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 203 4e-47 seq1 91.5 2e-13 >seq4 Length=3241893 Score = 203 bits (224), Expect = 4e-47 Identities = 592/899 (66%), Gaps = 12/899 (1%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| || || |||| | | || ||||||||||| | ||| ||||| | | | Sbjct 827243 TCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGGCACATGAGTGTC 827302 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 ||||| |||| |||| ||| || ||||| || || || |||||||| | || |||| Sbjct 827303 CACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCACAACGCGTAAAAT 827362 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 | || | | | | ||| || || || |||||| || || ||||| | | | Sbjct 827363 AAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCAAGGAAGCCGAAA 827422 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | || | ||||| || |||| ||| ||||| | | || || |||||||| || || Sbjct 827423 ACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGTTTGTTGCCGCCT 827482 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 ||||| | || |||||||| || || || || | | ||| || || | ||| || || Sbjct 827483 TGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGAC 827542 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGAC 63350 || ||||| || || || ||| || | |||||||| | ||| |||| Sbjct 827543 GTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAATCCGGTGGACATT--CAGAC 827600 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCC 63409 | || || ||||| |||| ||||| | ||||| ||| || | || |||||||||||| Sbjct 827601 CAATACCGCCTGCGGTTTTGGAGATCATGGCGCA-CGTCTTCAGTGTGTCATAGATGCCC 827659 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-CTAGT 63468 || || || || ||| |||| | | || || ||| ||||||||| | ||| || Sbjct 827660 TCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTGG-GGCGATGGGGT 827718 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA-TTTTTCAGAAAGTAGATTGT 63527 |||||||| || | ||| || |||||||| || || | || || | ||| ||||| Sbjct 827719 CCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTCGACATGTA-ATTGT 827777 Query 63528 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 | |||||||| || || || || ||| || || || | |||||||| | || Sbjct 827778 ATGTCTCAATTGCCTTATCGATGTCTTCGCCATGTATGCCGACGGACACACGCATCAGCA 827837 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 |||| || || | || | || |||| |||||| | | ||| || ||| | || Sbjct 827838 TGTGTTGTGGACGCTCGGCAATTTTGTCGTTTATGCGGAGGAGGTATGAGCGTTCAAGAG 827897 Query 63648 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707 | || ||||| || | | ||| ||||| || ||||| | ||| | |||||||| | Sbjct 827898 TCTTGAAACCGAAGAACTGGTAGTTGAAGTCGCGATCGTAGACGATAGCGGAGTTGAGAT 827957 Query 63708 TATCCTTATATTTGTTAACTACATCCATGGTAATAC-TTGAAATAATAGGAAAATGTTTC 63766 || | ||| | || | | | | | || ||||||| || || || Sbjct 827958 CGTCAGCGTGTTTCATGACGATGT-CGTAGACCGACTTTGAAATCATCGGCTGGCTCTTG 828016 Query 63767 CCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 63826 ||||| || || |||||||| ||| | | || | | || | ||| | ||||| Sbjct 828017 CCATTCTTTGGGTTGACATAATTGTAGAGGTCTTGTACGACAACCGAGAATTGCTTTTTG 828076 Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 |||| |||||| ||||| || || || || | || || || |||||||| || ||||| Sbjct 828077 GTTTGTTTGTGGAGATTCGAGACAGCGATACGTGCTGCGAGGATGGCATATTCGGGATG 828135 >seq1 Length=5232100 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| ||| | ||||| || | | || | ||| || || || || || Sbjct 3073327 CAGGCGAAGTCGGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTCGAGAAGGTCAGG 3073386 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || || ||||| || ||||| || |||||||| || |||||| |||||| Sbjct 3073387 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCGAAGGATCCACTGAAGAAA 3073446 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 32837 || || || || || |||||||| | ||| | | | | || ||| |||| | Sbjct 3073447 ATACCCTCGACAGCGGCAAAGGCTACAAGACGCGACGCGAAGGTGGAGCTCTTGTCAGAT 3073506 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 ||||| || ||||| ||||||||||| Sbjct 3073507 ATCCATTTCATTGCCCACTCGGCCTTCTT 3073535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631603980000