Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 176 8e-39 seq1 113 8e-20 seq7 104 4e-17 seq8 100 5e-16 seq2 89.7 9e-13 >seq3 Length=4703234 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | ||||||||||| |||||||| || |||||||| || |||||| Sbjct 3808504 CCACCGCGTAGACGGAGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3808445 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||| | ||||| || || ||| Sbjct 3808444 AGAGTTCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGATCCGGAGGA 3808385 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| || ||||| || | |||||| || Sbjct 3808384 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCCGATGATTCAACC 3808325 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || | |||||||||||| |||||||| Sbjct 3808324 TCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808278 Score = 158 bits (174), Expect = 2e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || || | |||||||| || || || || || || ||||| |||||||| Sbjct 3808961 TCCGCCACGCAGACGGAGCACCAAGTGCAGGGTCGATTCCTTCTGAATGTTGTAATCGGA 3808902 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || ||||| | |||||| || ||||| ||||| | || ||||| ||||| Sbjct 3808901 GAGAGTTCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCCGGTGG 3808842 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTA 68412 ||||| |||||||| || ||||| | ||||||| ||||||||||| |||| | || | Sbjct 3808841 GATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTC-GCTGGACTCGA 3808783 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | || ||||| || || || || ||||||||||| || ||||| Sbjct 3808782 CCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3808734 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| || ||||| Sbjct 3808276 CCACCACGGAGACGAAGGACGAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAT 3808217 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||||| ||||| || || || Sbjct 3808216 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGG 3808157 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| ||| |||||||| || | |||||| || Sbjct 3808156 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTATCCGATGATTCCACC 3808097 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || | |||||||||||| |||||||| Sbjct 3808096 TCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3808050 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| || || ||||| || |||||||| || ||| Sbjct 3808732 CCACCGCGCAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGCTC 3808673 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| |||||||| ||||| | ||||| || || || Sbjct 3808672 AACGTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCCGGGGGG 3808613 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||| || || | |||||| || Sbjct 3808612 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCGGATGATTCAACC 3808553 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || || || ||||||||||| || ||||| Sbjct 3808552 TCAAGCGTAATGGTCTTGCCGGTAAGCGTCTTGACGAAAATTTGCAT 3808506 >seq1 Length=5232100 Score = 113 bits (124), Expect = 8e-20 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||||| | ||||||||| || || || |||||||||||||| |||||| | Sbjct 3073023 CATGACGCCAGACTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 3073082 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCG--CCAAACTGCTTGGGGTAA 10052 | ||| ||| |||||||||||| |||||||| |||| |||| |||||| | Sbjct 3073083 CAAGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAAAC--CTTGGGATTG 3073140 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 ||||| | | | |||||| || |||||||||||||| |||| |||||| | ||| Sbjct 3073141 CCGAGAGACAATAGCAGGCGGTCGGCGACGAACTCGATGTATTGGCACATCAGACCAGAG 3073200 Query 10113 TTCATGCC 10120 ||||| || Sbjct 3073201 TTCATACC 3073208 >seq7 Length=3010262 Score = 104 bits (114), Expect = 4e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || ||||| ||||| || |||||||| |||||| | Sbjct 2377812 CCGCCACGCAGACGAAGGACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTG 2377871 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| ||||| | ||||||||||| || Sbjct 2377872 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGGGGG 2377931 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 |||||||| ||||| || ||||| | ||||| Sbjct 2377932 ATGCCTTCTTTGTCCTGGATCTTGGATTTGAC 2377963 >seq8 Length=2851179 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || | || | ||| || || ||||| || |||||||| || ||||| Sbjct 895293 TCCTCCACGCAGACGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 895234 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || ||||| | |||||| |||||||| || | | || ||||| || || Sbjct 895233 AAGGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGG 895174 Query 68354 AATGCCTTCCTTGTCTTGAA 68373 |||||| ||||||||||||| Sbjct 895173 AATGCCCTCCTTGTCTTGAA 895154 >seq2 Length=5130782 Score = 89.7 bits (98), Expect = 9e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| |||||| || || ||| ||| || |||| || || || || ||||| || Sbjct 4263950 TTCTGCTCGTAGTGGTAGATATCCGTGCAGACATCGTCGAGAAATCCGGAATCGTGAGAA 4263891 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATG-AGCCATGCCACGTT 225528 ||||| | | | | | ||| | |||| |||| || || |||||||| ||||| Sbjct 4263890 ACAATCAAGCTGGTGATTTCCGTGTGCTCCTTCAGGTA-GTTCTGCAGCCATGCGACGTT 4263832 Query 225529 GCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGAT 225588 | ||||||| ||| || ||||||||||| ||||||| || || || || || || Sbjct 4263831 GGCCACGTCCAAGTGATTAGTAGGTTCGTCGAGAAGCAAGACATCCGCGCGCATTAGCAT 4263772 Query 225589 GGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 || || | | || ||| ||||| ||||| || || ||||| ||||| Sbjct 4263771 AGCTCGAGCCAAAGCCAGTTTCATCTTCCATCCGCCAGACAGAGAGCC 4263724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621823986000