Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 280 3e-70 seq4 138 2e-27 >seq1 Length=5232100 Score = 280 bits (310), Expect = 3e-70 Identities = 381/522 (73%), Gaps = 21/522 (4%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 ||||||||| |||||||| || ||||| | || ||||| | | || | | || Sbjct 3073547 CCCTGCATCCGCAAGAAGGCCGAGTGGGCAATGAAATGGATATCT-GACAAGAGCTCCAC 3073489 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | | || ||||||||| |||| |||||||| || |||||| || |||| Sbjct 3073488 CTTCGCGTCGCGTCTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTT 3073429 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||||||||||||| || ||| || |||||||| || ||||||||||| | Sbjct 3073428 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTC-ATGCCCGGCCTGACCTTCTCGAATG 3073370 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 |||||||| | || ||||| |||| | ||||| ||||||||||| ||||| || Sbjct 3073369 AACTCATCTCTCGTGATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTTCTC---CC 3073313 Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 |||| |||| |||| | ||| || |||| | ||||||||| ||||| || || Sbjct 3073312 TTCTCA-ACACACGCCCAAGCAAGAAGGAGGTCGAGCACATCATCACCGAGGCGGTCAAG 3073254 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 |||||| | ||||||||||| || | ||||| | ||| |||| |||||| | Sbjct 3073253 ATCGAGCAAGAGTTCCTCACCGAGGCACTGCCTTGCGCGCTGCTCGGTATGAACTCTGGT 3073194 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049 || |||||| | |||||| ||| ||||||||||| || || | || |||| || Sbjct 3073193 CTGATGTGCCAATACATCGAGTTCGTCGCCGACCGCCTGCTAT------TGTCTCTCGGC 3073140 Query 43050 ---CGC---CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 | | | |||||| | | |||||||||||| |||||||||||||| |||| Sbjct 3073139 AATCCCAAGGTTTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCTTGGCC 3073080 Query 43104 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| |||||||||||||||| ||||||||| Sbjct 3073079 GGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAG 3073038 Score = 96.9 bits (106), Expect = 7e-15 Identities = 209/305 (69%), Gaps = 17/305 (6%) Strand=Plus/Minus Query 42291 CACCAGGACA--TCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAG 42347 ||| || ||| ||||| |||||||||||||| | || | ||| |||||||||||| Sbjct 3073947 CACTAGAACAGGTCTGGCAAATGTACAAGAAGGCCGAAGCT-TCCTTCTGGACCGCCGAA 3073889 Query 42348 GAGATTGACCTGGCCAAGGACACGGCCGGCTGG-----GAG--TCACTGTCTGAGAACGA 42400 ||||| || || |||| ||| || |||| ||| ||| || | || || Sbjct 3073888 GAGATCGATCTCTCCAAAGACCTTCACGACTGGAACAAGAGGCTCAATGACGATGAGCGC 3073829 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 || ||| | | || | || |||||||||||||| || |||||||| ||||| || Sbjct 3073828 ----TTCTTCATTTCACACGTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGA 3073773 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACG 42519 ||| |||| | | || | ||||| || ||| |||||||| |||||||| | Sbjct 3073772 GAATCTGGTCGAGCGCTTTAGCGGCGAGGTACAAATACCA-GAGGCGCGATGCTTCTATG 3073714 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 |||||||||| || |||||| | ||||| ||| |||| | || || |||| | Sbjct 3073713 GCTTCCAGATCATGATGGAGAACATCCACTCGGAGACGTACTCGCTGTTGATCGACACAT 3073654 Query 42580 ACATC 42584 ||||| Sbjct 3073653 ACATC 3073649 >seq4 Length=3241893 Score = 138 bits (152), Expect = 2e-27 Identities = 355/540 (66%), Gaps = 8/540 (1%) Strand=Plus/Plus Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972 ||||| || |||||||||| || | || || |||| || || || |||| Sbjct 827231 GTGTATAGCTCCTCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGG 827290 Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032 |||||||| ||||||||||| |||| || | || |||||| ||||| || ||||| Sbjct 827291 CACATGAGTGTCCACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCAC 827350 Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092 | || | || | ||| | | | || || |||| ||||||| || || Sbjct 827351 AACGCGTAAAATAAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCA 827410 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152 | ||| | || |||||| ||||||| ||||||| ||||| || | || || || || Sbjct 827411 AGGAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGT 827470 Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACT 245212 |||||||| || || || || ||| || |||| ||| || || |||| | Sbjct 827471 TTGTTGCCGCCTTGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATG 827530 Query 245213 ATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTG 245272 | ||||| || ||| || || || |||||||| || | | | | | | Sbjct 827531 AGACCGTTCGACGTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAAT----CCG 827586 Query 245273 ATGGACATGC----CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGT 245328 ||||||| | | | ||||| ||| |||||||| | |||||| |||| | || Sbjct 827587 GTGGACATTCAGACCAATACCGCCTGCGGTTTTGGAGATCATGGCGCACGTCTTCAGTGT 827646 Query 245329 GTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG 245388 ||| |||||||| ||||||||| |||||| | || || ||||||||||||| || Sbjct 827647 GTCATAGATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTG 827706 Query 245389 GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 |||| ||| | | || ||||| || || || ||||| || ||||| |||||| Sbjct 827707 GGGCGATGGGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTCGA 827766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338609788000