Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03-
01] 50 sequences; 45,966,240 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1 280 3e-70
seq4 138 2e-27
>seq1
Length=5232100
Score = 280 bits (310), Expect = 3e-70
Identities = 381/522 (73%), Gaps = 21/522 (4%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691
||||||||| |||||||| || ||||| | || ||||| | | || | | ||
Sbjct 3073547 CCCTGCATCCGCAAGAAGGCCGAGTGGGCAATGAAATGGATATCT-GACAAGAGCTCCAC 3073489
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|||| | | || ||||||||| |||| |||||||| || |||||| || ||||
Sbjct 3073488 CTTCGCGTCGCGTCTTGTAGCCTTTGCCGCTGTCGAGGGTATTTTCTTCAGTGGATCCTT 3073429
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
||| |||||||||||||||||| || ||| || |||||||| || ||||||||||| |
Sbjct 3073428 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTC-ATGCCCGGCCTGACCTTCTCGAATG 3073370
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
|||||||| | || ||||| |||| | ||||| ||||||||||| ||||| ||
Sbjct 3073369 AACTCATCTCTCGTGATGAGGGCATGCACACCGACTTCGCCTGCCTCCTCTTCTC---CC 3073313
Query 42871 ACCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929
|||| |||| |||| | ||| || |||| | ||||||||| ||||| || ||
Sbjct 3073312 TTCTCA-ACACACGCCCAAGCAAGAAGGAGGTCGAGCACATCATCACCGAGGCGGTCAAG 3073254
Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989
|||||| | ||||||||||| || | ||||| | ||| |||| |||||| |
Sbjct 3073253 ATCGAGCAAGAGTTCCTCACCGAGGCACTGCCTTGCGCGCTGCTCGGTATGAACTCTGGT 3073194
Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049
|| |||||| | |||||| ||| ||||||||||| || || | || |||| ||
Sbjct 3073193 CTGATGTGCCAATACATCGAGTTCGTCGCCGACCGCCTGCTAT------TGTCTCTCGGC 3073140
Query 43050 ---CGC---CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103
| | | |||||| | | |||||||||||| |||||||||||||| ||||
Sbjct 3073139 AATCCCAAGGTTTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCTTGGCC 3073080
Query 43104 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||||||||||||| |||||||||||||||| |||||||||
Sbjct 3073079 GGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAG 3073038
Score = 96.9 bits (106), Expect = 7e-15
Identities = 209/305 (69%), Gaps = 17/305 (6%)
Strand=Plus/Minus
Query 42291 CACCAGGACA--TCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAG 42347
||| || ||| ||||| |||||||||||||| | || | ||| ||||||||||||
Sbjct 3073947 CACTAGAACAGGTCTGGCAAATGTACAAGAAGGCCGAAGCT-TCCTTCTGGACCGCCGAA 3073889
Query 42348 GAGATTGACCTGGCCAAGGACACGGCCGGCTGG-----GAG--TCACTGTCTGAGAACGA 42400
||||| || || |||| ||| || |||| ||| ||| || | || ||
Sbjct 3073888 GAGATCGATCTCTCCAAAGACCTTCACGACTGGAACAAGAGGCTCAATGACGATGAGCGC 3073829
Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460
|| ||| | | || | || |||||||||||||| || |||||||| ||||| ||
Sbjct 3073828 ----TTCTTCATTTCACACGTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGA 3073773
Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACG 42519
||| |||| | | || | ||||| || ||| |||||||| |||||||| |
Sbjct 3073772 GAATCTGGTCGAGCGCTTTAGCGGCGAGGTACAAATACCA-GAGGCGCGATGCTTCTATG 3073714
Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579
|||||||||| || |||||| | ||||| ||| |||| | || || |||| |
Sbjct 3073713 GCTTCCAGATCATGATGGAGAACATCCACTCGGAGACGTACTCGCTGTTGATCGACACAT 3073654
Query 42580 ACATC 42584
|||||
Sbjct 3073653 ACATC 3073649
>seq4
Length=3241893
Score = 138 bits (152), Expect = 2e-27
Identities = 355/540 (66%), Gaps = 8/540 (1%)
Strand=Plus/Plus
Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972
||||| || |||||||||| || | || || |||| || || || ||||
Sbjct 827231 GTGTATAGCTCCTCGAACTCATCACCATAAACGTCCGCTAGACCAGGACATTCGTTCGGG 827290
Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032
|||||||| ||||||||||| |||| || | || |||||| ||||| || |||||
Sbjct 827291 CACATGAGTGTCCACTCGCCGTTCTCCTGCACGCGCTTCATGAACAGGTCCGGAATCCAC 827350
Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092
| || | || | ||| | | | || || |||| ||||||| || ||
Sbjct 827351 AACGCGTAAAATAAGTCACGAGCGCGAACTTCTTCTTTGCCATGATTCTTCCGGAGGTCA 827410
Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152
| ||| | || |||||| ||||||| ||||||| ||||| || | || || || ||
Sbjct 827411 AGGAAGCCGAAAACGTCGGCGTGCCATGGCTCCAGGTAGATGGCAAACGCACCTGGGCGT 827470
Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACT 245212
|||||||| || || || || ||| || |||| ||| || || |||| |
Sbjct 827471 TTGTTGCCGCCTTGATCAACATACCTAGCGGTATTGTTGTAGACACGAAGCATAGGGATG 827530
Query 245213 ATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTG 245272
| ||||| || ||| || || || |||||||| || | | | | | |
Sbjct 827531 AGACCGTTCGACGTGCCATTTGTTCCACCAATGTAGGCCCCGGTAGCACGAAT----CCG 827586
Query 245273 ATGGACATGC----CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGT 245328
||||||| | | | ||||| ||| |||||||| | |||||| |||| | ||
Sbjct 827587 GTGGACATTCAGACCAATACCGCCTGCGGTTTTGGAGATCATGGCGCACGTCTTCAGTGT 827646
Query 245329 GTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG 245388
||| |||||||| ||||||||| |||||| | || || ||||||||||||| ||
Sbjct 827647 GTCATAGATGCCCTCGATGCTGTCCTCCTTCATATCGATGAGGAAGCAGGAGGACATTTG 827706
Query 245389 GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448
|||| ||| | | || ||||| || || || ||||| || ||||| ||||||
Sbjct 827707 GGGCGATGGGGTCCCCGCATTGAAGAGGGTCGGCGAAGCGTGTGTGAAGTACTTGCTCGA 827766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338609788000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |